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Makefile
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## variables
# MODE=debug# set parameters for debugging code
MODE=release# set parameters for inference
## main operations
R:
R --quiet --no-save
all: install raw_data analysis
all_and_export: all export
clean:
@rm -rf data/intermediate/*
@rm -rf data/final/*
@rm -rf results/*
@touch data/intermediate/.gitkeep
@touch data/final/.gitkeep
@touch results/.gitkeep
# commands for updating time-stamps
touch:
touch data/intermediate/00*.rda
touch data/intermediate/01*.rda
touch data/intermediate/02*.rda
touch data/intermediate/03*.rda
# commands for running analysis
analysis: data/final/results.rda
data/final/results.rda: data/intermediate/03-*.rda code/R/analysis/04-*.R code/R/functions/get_solver_versions.R
R CMD BATCH --no-restore --no-save code/R/analysis/04-*.R
mv -f *.Rout data/intermediate/
data/intermediate/03-*.rda: data/intermediate/02-*.rda code/R/analysis/03-*.R code/parameters/benchmark.toml
export R_PROGRESSR_ENABLE=TRUE && R CMD BATCH --no-restore --no-save code/R/analysis/03-*.R
mv -f *.Rout data/intermediate/
data/intermediate/02-*.rda: data/intermediate/01-*.rda code/R/analysis/02-*.R code/parameters/data.toml
R CMD BATCH --no-restore --no-save code/R/analysis/02-*.R
mv -f *.Rout data/intermediate/
data/intermediate/01-*.rda: data/intermediate/00-*.rda code/R/analysis/01-*.R
R CMD BATCH --no-restore --no-save code/R/analysis/01-*.R
mv -f *.Rout data/intermediate/
data/intermediate/00-*.rda: code/R/analysis/00-*.R code/parameters/general.toml code/R/functions/session.R
R CMD BATCH --no-restore --no-save '--args MODE=$(MODE)' code/R/analysis/00-*.R
mv -f *.Rout data/intermediate/
# command to install dependencies
install:
R CMD BATCH --no-restore --no-save code/R/scripts/init.R
mv -f *.Rout data/intermediate/
snapshot:
R -e "renv::snapshot()"
# command to make readme
readme:
R --slave -e "rmarkdown::render('README.Rmd')"
# command to download data
raw_data: data/raw/planning-units/nplcc_cost_occupancy.zip
data/raw/planning-units/nplcc_cost_occupancy.zip:
R -e "piggyback::pb_download('nplcc_cost_occupancy.zip',repo='prioritizr/benchmark',dest='data/raw/planning-units',tag='v0.0.1')"
# command to export data so it can be accessed by prioritizr vignette
export: results/results.rda results/solutions.zip
R -e "piggyback::pb_upload('results/results.rda',repo='prioritizr/benchmark',tag='v0.0.6')"
R -e "piggyback::pb_upload('results/solutions.zip',repo='prioritizr/benchmark',tag='v0.0.6')"
R -e "piggyback::pb_upload('results/solver_versions.csv',repo='prioritizr/benchmark',tag='v0.0.6')"
.PHONY: install raw_data analysis export