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@github-actions github-actions released this 09 May 16:40
· 713 commits to master since this release
v1.1.12.0
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Learn about vigilant mode.

This release implements the changes necessary for the Poseidon schema v2.7.1. That mostly means that the constraints on several .ssf file columns previously considered mandatory and unique were lifted.

Beyond that a number of type constraints specified already in Poseidon v2.7.0 for the .ssf file were finally implemented in poseidon-hs. A broken file will, thus actually be flagged upon reading if it violates the following requirements:

  • .ssf columns that include Accession_IDs have to feature the correct and valid Accession_IDs according to INSDC specification.
  • .ssf columns with dates have to be valid dates of the form YYYY-MM-DD.
  • .ssf columns featuring MD5 hashes require entries with exactly 32 hex-digits.

Both for the .janno and the .ssf file we elevated the log level of the common broken lines error from debug to error. This makes these errors more prominent and more easy to resolve.

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