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clarified output format help text
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stschiff committed Feb 25, 2025
1 parent 4a759b2 commit 6375ff9
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/Poseidon/CLI/OptparseApplicativeParsers.hs
Original file line number Diff line number Diff line change
Expand Up @@ -374,13 +374,13 @@ parseOutGenotypeFormat withDefault =
settingsWithDefault =
OP.long "outFormat" <>
OP.metavar "FORMAT" <>
OP.help "The format of the output genotype data: EIGENSTRAT or PLINK." <>
OP.help "The format of the output genotype data: EIGENSTRAT, PLINK or VCF." <>
OP.value GenotypeOutFormatPlink <>

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OP.showDefault
settingsWithoutDefault =
OP.long "outFormat" <>
OP.metavar "FORMAT" <>
OP.help "the format of the output genotype data: EIGENSTRAT or PLINK."
OP.help "the format of the output genotype data: EIGENSTRAT, PLINK or VCF."

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parseGenoDataSources :: OP.Parser [GenoDataSource]
parseGenoDataSources = OP.some parseGenoDataSource
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