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ponnhide/pyCircos
Adding track marks to chromosomes

I would like to add tracks marking the chromosome coordinates on each chromosome rectangle. It should look somehow like here, but preferably with more ticks and less numbers. This is my graph so far: ...
  • jamonterotena
  • Opened 
    on Dec 11, 2024
  • #36

ponnhide/pyCircos
Add requests to dependence

the module requests is in using but not list in dependence
  • Kiri2002
  • Opened 
    on May 12, 2024
  • #34

ponnhide/pyCircos
Issue with plotting CDS

Dear I tried to follow tutorial 2 on the example dataset and whenever plotting the CDS, I receive following error message. I have tried to resolve it myself without success. AttributeError Traceback ...
  • menickname
  • 1
  • Opened 
    on Jan 21, 2024
  • #32

ponnhide/pyCircos
Adding legend (colormap)

Hi I am struggling to add a colormap legend to the plot. How can this be done?
  • alpha-1-centauri
  • Opened 
    on Jun 26, 2023
  • #31

ponnhide/pyCircos
Y axis labels

Is it possible to label y axis, for example with a scatterplot?
  • jodyphelan
  • Opened 
    on Mar 13, 2023
  • #30

ponnhide/pyCircos
arrows for edges?

Hi, thanks for this really great package! I m trying to incorporate the chord diagrams as a way to visualise cellular interactions. So far it s great and i manage to create a plot that looks like: image ...
enhancement
  • zktuong
  • 1
  • Opened 
    on Nov 30, 2022
  • #28

ponnhide/pyCircos
make the parameter names on the outer circle

Hi Hideto Mori, Is there a way to outline the text on the circle like the image below? image Thanks, Minghao Gong
enhancement
  • gmhhope
  • Opened 
    on Nov 29, 2022
  • #27

ponnhide/pyCircos
Adding text inside each arc in a circle

Hello @ponnhide, I m trying to plot a circos diagram (like the one here) using pycircos. I tried to do the first arc following the tutorials. I am trying to understand how to add text in each arc. Code: ...
enhancement
  • DeepaMahm
  • Opened 
    on Nov 2, 2022
  • #26

ponnhide/pyCircos
How are the ID's linked to the Phyla for the phylogenetic tree example?

Hey, this looks like a very useful code set. Thanks for your effort here. I would like to customize this for my use, but from the example (without any comments) I am unclear how the highlight_dict for ...
  • rotheconrad
  • 1
  • Opened 
    on Oct 12, 2022
  • #25

ponnhide/pyCircos
Add opacity?

Is it possible to add opacity to the chord plots?
  • gdolsten
  • 1
  • Opened 
    on Oct 6, 2022
  • #24
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