closes #4602; closes #4602; closes #4600

[ValWood]

No description provided.

[github-actions]

Changes added to the edit file this PR

Click to expand

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal guanyl-nucleotide exchange factor activity http://purl.obolibrary.org/obo/FYPO_0008289

Added

• abnormal guanyl-nucleotide exchange factor activity has_obo_namespace "fission_yeast_phenotype"

• abnormal guanyl-nucleotide exchange factor activity has_exact_synonym "abnormal GEF activity"

• abnormal guanyl-nucleotide exchange factor activity creation_date "2024-09-02T10:48:48Z"^^dateTime

• abnormal guanyl-nucleotide exchange factor activity label "abnormal guanyl-nucleotide exchange factor activity"@en

• abnormal guanyl-nucleotide exchange factor activity created_by "vw"

• abnormal guanyl-nucleotide exchange factor activity definition "A molecular function phenotype in which a guanyl-nucleotide exchange factor activity is abnormal."

  • database_cross_reference "PomBase:vw"

• Class: abnormal guanyl-nucleotide exchange factor activity

• abnormal guanyl-nucleotide exchange factor activity EquivalentTo has part some
  (quality and (characteristic of some guanyl-nucleotide exchange factor activity) and (has modifier some abnormal))

• abnormal guanyl-nucleotide exchange factor activity SubClassOf abnormal catalytic activity

abolished RNA pyrophosphohydrolase activity http://purl.obolibrary.org/obo/FYPO_0003664

Removed

• abolished RNA pyrophosphohydrolase activity EquivalentTo has part some
  (lacking processual parts and (characteristic of some mRNA 5'-diphosphatase activity) and (has modifier some abnormal))

abolished guanyl-nucleotide exchange factor activity http://purl.obolibrary.org/obo/FYPO_0008290

Added

• abolished guanyl-nucleotide exchange factor activity created_by "vw"

• abolished guanyl-nucleotide exchange factor activity definition "A molecular function phenotype in which a guanyl-nucleotide exchange factor activity is absent."

  • database_cross_reference "PomBase:vw"

• abolished guanyl-nucleotide exchange factor activity label "abolished guanyl-nucleotide exchange factor activity"@en

• abolished guanyl-nucleotide exchange factor activity has_exact_synonym "abolished GEF activity"

• abolished guanyl-nucleotide exchange factor activity creation_date "2024-09-02T10:51:58Z"^^dateTime

• abolished guanyl-nucleotide exchange factor activity has_obo_namespace "fission_yeast_phenotype"

• Class: abolished guanyl-nucleotide exchange factor activity

• abolished guanyl-nucleotide exchange factor activity EquivalentTo has part some
  (lacking processual parts and (characteristic of some guanyl-nucleotide exchange factor activity) and (has modifier some abnormal))

• abolished guanyl-nucleotide exchange factor activity SubClassOf abnormal guanyl-nucleotide exchange factor activity

increased cellular ceramide level http://purl.obolibrary.org/obo/FYPO_0008288

Added

• increased cellular ceramide level created_by "vw"

• increased cellular ceramide level label "increased cellular ceramide level"@en

• increased cellular ceramide level creation_date "2024-09-02T10:41:06Z"^^dateTime

• increased cellular ceramide level has_obo_namespace "fission_yeast_phenotype"

• increased cellular ceramide level definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a ceramide measured in a cell higher than normal."

  • database_cross_reference "PomBase:pc"

• Class: increased cellular ceramide level

• increased cellular ceramide level EquivalentTo has part some
  (increased concentration and (characteristic of some fungal cell) and (towards some ceramide))

• increased cellular ceramide level SubClassOf increased level of substance in cell during vegetative growth

sensitive to 1-chloro-2,4-dinitrobenzene http://purl.obolibrary.org/obo/FYPO_0008287

Added

• sensitive to 1-chloro-2,4-dinitrobenzene creation_date "2024-09-02T10:33:42Z"^^dateTime

• sensitive to 1-chloro-2,4-dinitrobenzene created_by "vw"

• sensitive to 1-chloro-2,4-dinitrobenzene label "sensitive to 1-chloro-2,4-dinitrobenzene"@en

• sensitive to 1-chloro-2,4-dinitrobenzene definition "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 1-chloro-2,4-dinitrobenzene (CDNB). Cells stop growing (and may die) at a concentration of 1-chloro-2,4-dinitrobenzene that allows wild type cells to grow."

  • database_cross_reference "PomBase:pc"

• sensitive to 1-chloro-2,4-dinitrobenzene has_obo_namespace "fission_yeast_phenotype"

• Class: sensitive to 1-chloro-2,4-dinitrobenzene

• sensitive to 1-chloro-2,4-dinitrobenzene SubClassOf increased sensitivity to chemical during vegetative growth

Changes to ontology after reasoner runs

Click to expand

Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
WARN	missing_obsolete_label	DEPRECATED increased subtelomere-derived RNA level	rdfs:label	DEPRECATED increased subtelomere-derived RNA level
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf