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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0008216

Added

• abnormal DNA N-glycosylase activity created_by "vw"

• abnormal DNA N-glycosylase activity has_obo_namespace "fission_yeast_phenotype"

• abnormal DNA N-glycosylase activity definition "A molecular function phenotype in which the observed rate of DNA N-glycosylase activity is abnormal."

  • database_cross_reference "PomBase:vw"

• abnormal DNA N-glycosylase activity label "abnormal DNA N-glycosylase activity"@en

• abnormal DNA N-glycosylase activity creation_date "2024-05-08T14:25:17Z"^^dateTime

• Class: abnormal DNA N-glycosylase activity

• abnormal DNA N-glycosylase activity EquivalentTo has_part some
  (quality and (inheres_in some DNA N-glycosylase activity) and (qualifier some abnormal))

• abnormal DNA N-glycosylase activity SubClassOf abnormal catalytic activity

abnormal DNA-1,N6-ethenoadenine N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0000692

Removed

• abnormal DNA-1,N6-ethenoadenine N-glycosylase activity SubClassOf abnormal catalytic activity

Added

• abnormal DNA-1,N6-ethenoadenine N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

abnormal hypoxanthine DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0004279

Removed

• abnormal hypoxanthine DNA N-glycosylase activity SubClassOf abnormal catalytic activity

Added

• abnormal hypoxanthine DNA N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

abnormal oxanine DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0004283

Removed

• abnormal oxanine DNA N-glycosylase activity SubClassOf abnormal catalytic activity

Added

• abnormal oxanine DNA N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

abnormal purine-specific mismatch base pair DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0004676

Removed

• abnormal purine-specific mismatch base pair DNA N-glycosylase activity SubClassOf abnormal catalytic activity

Added

• abnormal purine-specific mismatch base pair DNA N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

abnormal uracil DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0004277

Removed

• abnormal uracil DNA N-glycosylase activity SubClassOf abnormal catalytic activity

Added

• abnormal uracil DNA N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

abnormal xanthine DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0004281

Removed

• abnormal xanthine DNA N-glycosylase activity SubClassOf abnormal catalytic activity

Added

• abnormal xanthine DNA N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

abolished chromatin binding at promoter region http://purl.obolibrary.org/obo/FYPO_0008210

Added

• abolished chromatin binding at promoter region definition "A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) at one or more promoter regions does not occur."

  • database_cross_reference "PomBase:vw"

• abolished chromatin binding at promoter region created_by "vw"

• abolished chromatin binding at promoter region label "abolished chromatin binding at promoter region"@en

• abolished chromatin binding at promoter region has_obo_namespace "fission_yeast_phenotype"

• abolished chromatin binding at promoter region creation_date "2024-05-08T13:40:02Z"^^dateTime

• Class: abolished chromatin binding at promoter region

• abolished chromatin binding at promoter region SubClassOf abolished chromatin binding

abolished histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth http://purl.obolibrary.org/obo/FYPO_0006112

Removed

• abolished histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth SubClassOf abolished histone methylation during vegetative growth

Added

• abolished histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth SubClassOf abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth

abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008212

Added

• abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth has_obo_namespace "fission_yeast_phenotype"

• abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth label "abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth"@en

• abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth created_by "vw"

• abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 in silent mating-type cassettes does not occur."

  • database_cross_reference "PomBase:vw"

• abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth creation_date "2024-05-08T13:50:33Z"^^dateTime

• Class: abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth

• abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth SubClassOf abolished histone H3-K9 methylation during vegetative growth

abolished protein neddylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008208

Added

• abolished protein neddylation during vegetative growth has_obo_namespace "fission_yeast_phenotype"

decreased antisense RNA level during heat stress http://purl.obolibrary.org/obo/FYPO_0008211

Added

• decreased antisense RNA level during heat stress has_obo_namespace "fission_yeast_phenotype"

• decreased antisense RNA level during heat stress creation_date "2024-05-08T13:47:34Z"^^dateTime

• decreased antisense RNA level during heat stress definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of antisense RNA measured in a cell is lower than normal duing heat stress. Antisense RNA is transcribed from the coding, rather than the template, strand of DNA."

  • database_cross_reference "PomBase:vw"

• decreased antisense RNA level during heat stress created_by "vw"

• decreased antisense RNA level during heat stress label "decreased antisense RNA level during heat stress"@en

• Class: decreased antisense RNA level during heat stress

• decreased antisense RNA level during heat stress SubClassOf decreased antisense RNA level

decreased pre-mRNA level during cellular response to heat http://purl.obolibrary.org/obo/FYPO_0008214

Added

• decreased pre-mRNA level during cellular response to heat definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of pre-mRNA measured in a cell during a cellular response to heat is lower than normal. Total pre-mRNA or a specific pre-mRNA may be affected."

  • database_cross_reference "PomBase:vw"

• decreased pre-mRNA level during cellular response to heat creation_date "2024-05-08T14:12:11Z"^^dateTime

• decreased pre-mRNA level during cellular response to heat created_by "vw"

• decreased pre-mRNA level during cellular response to heat label "decreased pre-mRNA level during cellular response to heat"@en

• decreased pre-mRNA level during cellular response to heat has_obo_namespace "fission_yeast_phenotype"

• Class: decreased pre-mRNA level during cellular response to heat

• decreased pre-mRNA level during cellular response to heat SubClassOf decreased RNA level during cellular response to heat

• decreased pre-mRNA level during cellular response to heat SubClassOf decreased pre-mRNA level

increased DNA N-glycosylase activity http://purl.obolibrary.org/obo/FYPO_0008217

Added

• increased DNA N-glycosylase activity creation_date "2024-05-08T14:33:49Z"^^dateTime

• increased DNA N-glycosylase activity label "increased DNA N-glycosylase activity"@en

• increased DNA N-glycosylase activity created_by "vw"

• increased DNA N-glycosylase activity definition "A molecular function phenotype in which the observed rate of DNA N-glycosylase activity is increased."

• Class: increased DNA N-glycosylase activity

• increased DNA N-glycosylase activity EquivalentTo has_part some
  (increased rate and (inheres_in some DNA N-glycosylase activity))

• increased DNA N-glycosylase activity SubClassOf abnormal DNA N-glycosylase activity

increased vegetative cell population growth on lactate carbon source http://purl.obolibrary.org/obo/FYPO_0008213

Added

• increased vegetative cell population growth on lactate carbon source creation_date "2024-05-08T14:06:36Z"^^dateTime

• increased vegetative cell population growth on lactate carbon source definition "A vegetative cell population phenotype in which cell growth is increased relative to normal in a medium containing lactate as the carbon source."

  • database_cross_reference "PomBase:vw"

• increased vegetative cell population growth on lactate carbon source label "increased vegetative cell population growth on lactate carbon source"@en

• increased vegetative cell population growth on lactate carbon source created_by "vw"

• increased vegetative cell population growth on lactate carbon source has_obo_namespace "fission_yeast_phenotype"

• Class: increased vegetative cell population growth on lactate carbon source

• increased vegetative cell population growth on lactate carbon source SubClassOf increased vegetative cell population growth

resistance to Rho GTPase inhibitor O1 http://purl.obolibrary.org/obo/FYPO_0008215

Added

• resistance to Rho GTPase inhibitor O1 creation_date "2024-05-08T14:17:51Z"^^dateTime

• resistance to Rho GTPase inhibitor O1 has_obo_namespace "fission_yeast_phenotype"

• resistance to Rho GTPase inhibitor O1 created_by "vw"

• resistance to Rho GTPase inhibitor O1 label "resistance to Rho GTPase inhibitor O1"@en

• resistance to Rho GTPase inhibitor O1 definition "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of GTPase inhibitor O1 than normal."

  • comment "PomBase:vw"

• Class: resistance to Rho GTPase inhibitor O1

• resistance to Rho GTPase inhibitor O1 SubClassOf increased resistance to chemical during vegetative growth

Changes to ontology after reasoner runs

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Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf