closes #4437;closes #4536; closes #4537; closes #4538; closes #4538; …

[ValWood]

…closes #4539; closes #4540;

[github-actions]

Changes added to the edit file this PR

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abolished protein localization to nucleus during hypoxia http://purl.obolibrary.org/obo/FYPO_0008206

Added

• abolished protein localization to nucleus during hypoxia label "abolished protein localization to nucleus during hypoxia"@en

• abolished protein localization to nucleus during hypoxia creation_date "2024-05-03T11:51:41Z"^^dateTime

• abolished protein localization to nucleus during hypoxia created_by "vw"

• abolished protein localization to nucleus during hypoxia definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abolished during hypoxic stress."

  • database_cross_reference "PomBase:vw"

• Class: abolished protein localization to nucleus during hypoxia

• abolished protein localization to nucleus during hypoxia SubClassOf abolished protein localization to nucleus during vegetative growth

abolished protein neddylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008208

Added

• abolished protein neddylation during vegetative growth label "abolished protein neddylation during vegetative growth"@en

• abolished protein neddylation during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the neddylation of one or more specific proteins, or of specific protein sites, is abolished."

  • database_cross_reference "PomBase:vw"

• abolished protein neddylation during vegetative growth creation_date "2024-05-03T12:03:19Z"^^dateTime

• abolished protein neddylation during vegetative growth created_by "vw"

• Class: abolished protein neddylation during vegetative growth

• abolished protein neddylation during vegetative growth SubClassOf abolished protein modification during vegetative growth

decreased vegetative cell population growth on low glucose http://purl.obolibrary.org/obo/FYPO_0008128

Removed

• decreased vegetative cell population growth on low glucose definition "A vegetative cell population phenotype in which cell growth is decreased relative to normal in a medium containing low glucose . This term refers to situations where glucose is below 0.5%."
  • database_cross_reference "PMID:37859837"

Added

• decreased vegetative cell population growth on low glucose definition "A vegetative cell population phenotype in which cell growth is decreased relative to normal in a medium containing low glucose. This term refers to situations where glucose is below 0.2%."
  • database_cross_reference "PMID:37859837"

increased protein localization to nucleus during hypoxia http://purl.obolibrary.org/obo/FYPO_0008205

Added

• increased protein localization to nucleus during hypoxia created_by "vw"

• increased protein localization to nucleus during hypoxia creation_date "2024-05-03T11:47:02Z"^^dateTime

• increased protein localization to nucleus during hypoxia definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is increased during hypoxic stress."

  • database_cross_reference "PomBase:vw"

• increased protein localization to nucleus during hypoxia label "increased protein localization to nucleus during hypoxia"@en

• Class: increased protein localization to nucleus during hypoxia

• increased protein localization to nucleus during hypoxia SubClassOf increased protein localization to nucleus during vegetative growth

inviable elongated multinucleate aseptate vegetative cell http://purl.obolibrary.org/obo/FYPO_0002024

Added

• inviable elongated multinucleate aseptate vegetative cell has_related_synonym "septation initiation defective"

normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008209

Added

• normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth label "normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth"@en

• normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth created_by "vw"

• normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 is normal at the silent mating-type cassette (i.e. indistinguishable from wild type)."

  • database_cross_reference "PomBase:vw"

• normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth creation_date "2024-05-03T12:07:01Z"^^dateTime

• Class: normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth

• normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth SubClassOf normal histone H3-K14 acetylation during vegetative growth

normal microfilament motor activity http://purl.obolibrary.org/obo/FYPO_0008207

Added

• normal microfilament motor activity created_by "vw"

• normal microfilament motor activity creation_date "2024-05-03T11:59:25Z"^^dateTime

• normal microfilament motor activity label "normal microfilament motor activity"@en

• normal microfilament motor activity definition "A molecular function phenotype in which the observed rate or other property of a microfilament motor activity is normal (i.e. indistinguishable from wild type)."

  • database_cross_reference "PomBase:pc"

• Class: normal microfilament motor activity

• normal microfilament motor activity SubClassOf normal molecular function

Changes to ontology after reasoner runs

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Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf