‘closes

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abolished nuclear foci http://purl.obolibrary.org/obo/FYPO_0008168

Added

• abolished nuclear foci created_by "vw"

• abolished nuclear foci creation_date "2024-03-20T13:43:19Z"^^dateTime

• abolished nuclear foci label "abolished nuclear foci"@en

• abolished nuclear foci definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the nuclear foci are absent."

• Class: abolished nuclear foci

• abolished nuclear foci SubClassOf abnormal cellular physical quality phenotype

abolished protein localization to chromatin at replication origin http://purl.obolibrary.org/obo/FYPO_0005095

Removed

• abolished protein localization to chromatin at replication origin SubClassOf abolished protein localization to centromeric chromatin during vegetative growth

decreased RNA polymerase II CTD Ser5-P binding http://purl.obolibrary.org/obo/FYPO_0008181

Added

• decreased RNA polymerase II CTD Ser5-P binding creation_date "2024-03-20T11:51:41Z"^^dateTime

• decreased RNA polymerase II CTD Ser5-P binding created_by "vw"

• decreased RNA polymerase II CTD Ser5-P binding label "decreased RNA polymerase II CTD Ser5-P binding"@en

• decreased RNA polymerase II CTD Ser5-P binding definition "A molecular function phenotype in which binding by a gene product to the RNA polymerase II CTD domain phosphorylated serine 5 is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene."

  • database_cross_reference "PomBase:vw"

• Class: decreased RNA polymerase II CTD Ser5-P binding

• decreased RNA polymerase II CTD Ser5-P binding SubClassOf decreased RNA polymerase II CTD binding

decreased RNA polymerase II CTD binding http://purl.obolibrary.org/obo/FYPO_0008180

Added

• decreased RNA polymerase II CTD binding definition "A molecular function phenotype in which binding by a gene product to the RNA polymerase II CTD domain is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene."

  • database_cross_reference "PomBase:vw"

• decreased RNA polymerase II CTD binding label "decreased RNA polymerase II CTD binding"@en

• decreased RNA polymerase II CTD binding created_by "vw"

• decreased RNA polymerase II CTD binding creation_date "2024-03-20T11:47:57Z"^^dateTime

• Class: decreased RNA polymerase II CTD binding

• decreased RNA polymerase II CTD binding SubClassOf binding phenotype

decreased Spt5-CTD binding http://purl.obolibrary.org/obo/FYPO_0008182

Added

• decreased Spt5-CTD binding definition "A molecular function phenotype in which binding by a gene product to the Spt5 CTD domain is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene."

• decreased Spt5-CTD binding creation_date "2024-03-20T11:55:25Z"^^dateTime

• decreased Spt5-CTD binding created_by "vw"

• decreased Spt5-CTD binding label "decreased Spt5-CTD binding"@en

• Class: decreased Spt5-CTD binding

• decreased Spt5-CTD binding SubClassOf binding phenotype

decreased histone H3-S10 phosphorylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008183

Added

• decreased histone H3-S10 phosphorylation during vegetative growth creation_date "2024-03-20T12:04:24Z"^^dateTime

• decreased histone H3-S10 phosphorylation during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H3-S10 phosphorylation is decreased."

• decreased histone H3-S10 phosphorylation during vegetative growth label "decreased histone H3-S10 phosphorylation during vegetative growth"@en

• decreased histone H3-S10 phosphorylation during vegetative growth created_by "vw"

• Class: decreased histone H3-S10 phosphorylation during vegetative growth

• decreased histone H3-S10 phosphorylation during vegetative growth SubClassOf abnormal histone phosphorylation during vegetative growth

decreased protein localization to processome http://purl.obolibrary.org/obo/FYPO_0008184

Added

• decreased protein localization to processome definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the processome is decreased."

• decreased protein localization to processome creation_date "2024-03-20T12:10:40Z"^^dateTime

• decreased protein localization to processome created_by "vw"

• decreased protein localization to processome label "decreased protein localization to processome"@en

• Class: decreased protein localization to processome

• decreased protein localization to processome SubClassOf abnormal protein localization during vegetative growth

increased centromeric inner repeat transcript level http://purl.obolibrary.org/obo/FYPO_0008176

Added

• increased centromeric inner repeat transcript level comment "This term encompasses both unprocessed RNA transcribed from the centromere inner repeat region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of RNA transcribed from endogenous centromere inner repeat sequences. For levels of RNA transcribed from an exogenous reporter gene placed in the inner repeat region, consider 'decreased chromatin silencing at centromere outer repeat region' (FYPO:0003412)."

• increased centromeric inner repeat transcript level definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromere inner repeat region are present at greater levels than normal."

• increased centromeric inner repeat transcript level created_by "vw"

• increased centromeric inner repeat transcript level label "increased centromeric inner repeat transcript level"@en

• increased centromeric inner repeat transcript level creation_date "2024-03-20T11:28:55Z"^^dateTime

• Class: increased centromeric inner repeat transcript level

• increased centromeric inner repeat transcript level SubClassOf increased centromeric transcript level

increased number of nuclear foci http://purl.obolibrary.org/obo/FYPO_0008163

Added

• increased number of nuclear foci created_by "vw"

• increased number of nuclear foci comment "A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of nuclear foci are increased."

• increased number of nuclear foci creation_date "2024-03-20T13:41:51Z"^^dateTime

• increased number of nuclear foci label "increased number of nuclear foci"@en

• Class: increased number of nuclear foci

• increased number of nuclear foci SubClassOf abnormal cellular physical quality phenotype

normal centromeric RNA level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008177

Added

• normal centromeric RNA level during vegetative growth comment "This term encompasses both unprocessed RNA transcribed from the centromere t region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of endogenous RNAs."

• normal centromeric RNA level during vegetative growth created_by "vw"

• normal centromeric RNA level during vegetative growth label "normal centromeric RNA level during vegetative growth"@en

• normal centromeric RNA level during vegetative growth creation_date "2024-03-20T11:32:16Z"^^dateTime

• normal centromeric RNA level during vegetative growth definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNAs transcribed from the centromere measured in a cell is normal (i.e. indistinguishable from wild type)."

• Class: normal centromeric RNA level during vegetative growth

• normal centromeric RNA level during vegetative growth SubClassOf normal RNA level during vegetative growth

normal centromeric inner repeat transcript level http://purl.obolibrary.org/obo/FYPO_0008178

Added

• normal centromeric inner repeat transcript level comment "This term encompasses both unprocessed RNA transcribed from the centromere inner repeat region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of RNA transcribed from endogenous centromere inner repeat sequences."

• normal centromeric inner repeat transcript level definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromere inner repeat region are present at normal levels (i.e. indistinguishable from wild-type)."

• normal centromeric inner repeat transcript level created_by "vw"

• normal centromeric inner repeat transcript level creation_date "2024-03-20T11:34:30Z"^^dateTime

• normal centromeric inner repeat transcript level label "normal centromeric inner repeat transcript level"@en

• Class: normal centromeric inner repeat transcript level

• normal centromeric inner repeat transcript level SubClassOf normal centromeric RNA level during vegetative growth

normal centromeric outer repeat transcript level http://purl.obolibrary.org/obo/FYPO_0002567

Removed

• normal centromeric outer repeat transcript level SubClassOf normal RNA level during vegetative growth

Added

• normal centromeric outer repeat transcript level SubClassOf normal centromeric RNA level during vegetative growth

normal oxygen consumption http://purl.obolibrary.org/obo/FYPO_0008175

Added

• normal oxygen consumption created_by "vw"

• normal oxygen consumption definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the amount of oxygen consumed by cells in a given time is normal."

• normal oxygen consumption creation_date "2024-03-20T11:26:08Z"^^dateTime

• normal oxygen consumption label "normal oxygen consumption"@en

• Class: normal oxygen consumption

• normal oxygen consumption SubClassOf normal vegetative phenotype

Changes to ontology after reasoner runs

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Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	increased number of nuclear foci	definition	
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf