‘closes (#4524)

* ‘closes * ‘closes
pombase · Apr 9, 2024 · 8a1d9fb · 8a1d9fb
1 parent 6d20a9a
commit 8a1d9fb
Showing 1 changed file with 32 additions and 4 deletions.
diff --git a/src/ontology/fypo-edit.owl b/src/ontology/fypo-edit.owl
@@ -8662,14 +8662,17 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008183>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008184>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008185>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008186>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008187>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008188>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008189>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008190>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008191>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008192>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008193>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008194>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008195>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008196>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008197>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009002>))
@@ -90539,7 +90542,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRel
 AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0005353> "FYPO:0005353")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0005353> "normal replication fork arrest at mating-type locus")
 EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0005353> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0011000>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
-SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005353> <http://purl.obolibrary.org/obo/FYPO_0001319>)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005353> <http://purl.obolibrary.org/obo/FYPO_0008191>)
 
 # Class: <http://purl.obolibrary.org/obo/FYPO_0005354> (normal site-specific DNA replication termination at RTS1 barrier)
 
@@ -118627,7 +118630,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRel
 AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0007205> "FYPO:0007205")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0007205> "normal replication fork arrest at rDNA repeats")
 EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0007205> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0031582>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
-SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0007205> <http://purl.obolibrary.org/obo/FYPO_0001319>)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0007205> <http://purl.obolibrary.org/obo/FYPO_0008191>)
 
 # Class: <http://purl.obolibrary.org/obo/FYPO_0007206> (abolished replication fork arrest at rDNA repeats)
 
@@ -122257,7 +122260,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0061709") oboInOwl:hasRela
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0007446> "decreased reticulophagy during cellular response to endoplasmic reticulum stress during mitotic cell cycle")
 AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0007446> "FYPO:0007446")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0007446> "decreased reticulophagy during cellular response to endoplasmic reticulum stress")
-SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0007446> <http://purl.obolibrary.org/obo/FYPO_0007445>)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0007446> <http://purl.obolibrary.org/obo/FYPO_0008197>)
 
 # Class: <http://purl.obolibrary.org/obo/FYPO_0007447> (abolished reticulophagy during cellular response to endoplasmic reticulum stress)
 
@@ -131491,6 +131494,14 @@ AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008186> "normal histone H3-K9 trimethylation at centromere central core during vegetative growth"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008186> <http://purl.obolibrary.org/obo/FYPO_0008070>)
 
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008187> (abolished histone H4 binding)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38285941") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008187> "A molecular function phenotype in which occurrence of histone H4 binding by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008187> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008187> "2024-04-09T05:46:05Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008187> "abolished histone H4 binding"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008187> <http://purl.obolibrary.org/obo/FYPO_0007157>)
+
 # Class: <http://purl.obolibrary.org/obo/FYPO_0008188> (abolished histone H3-K9 trimethylation at centromere central core during vegetative growth)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008188> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in the centromere central core is abolished.")
@@ -131509,12 +131520,21 @@ SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008189> <http://purl.obolibrary
 
 # Class: <http://purl.obolibrary.org/obo/FYPO_0008190> (increased protein localization to chromatin at centromere central core during meiotic prophase I)
 
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008190> "A cell phenotype in which the localization of a protein to chromatin at the centromere central core is increased during the meiotic prophase I.")
 AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008190> "vw")
 AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008190> "2024-03-30T09:13:26Z"^^xsd:dateTime)
-AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008190> "A cell phenotype in which the localization of a protein to chromatin at the centromere central core is increased during the meiotic prophase I.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008190> "increased protein localization to chromatin at centromere central core during meiotic prophase I"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008190> <http://purl.obolibrary.org/obo/FYPO_0003549>)
 
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008191> (normal replication fork arrest)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008191> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at a natural  replication barrier is normal (i.e. indistinguishable from wild type).")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008191> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008191> "2024-04-09T05:49:10Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008191> "normal replication fork arrest"@en)
+EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008191> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0043111>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008191> <http://purl.obolibrary.org/obo/FYPO_0001319>)
+
 # Class: <http://purl.obolibrary.org/obo/FYPO_0008192> (increased protein localization to pericentric heterochromatin during meiotic prophase I)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008192> "A cell phenotype in which the localization of a protein to pericentric heterochromatin is increased during prophase of the first meiotic nuclear division.")
@@ -131555,6 +131575,14 @@ AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008196> "increased histone H3-K9Me binding"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008196> <http://purl.obolibrary.org/obo/FYPO_0007835>)
 
+# Class: <http://purl.obolibrary.org/obo/FYPO_0008197> (decreased reticulophagy during vegetative growth)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37553386") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008197> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagic degradation of the endoplasmic reticulum occurs to a lower extent than normal.")
+AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008197> "vw")
+AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008197> "2024-04-09T05:56:10Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008197> "decreased reticulophagy during vegetative growth"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008197> <http://purl.obolibrary.org/obo/FYPO_0007445>)
+
 # Class: <http://purl.obolibrary.org/obo/FYPO_0009000> (decreased rate of cytoplasmic microtubule polymerization during mitotic interphase)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36633091") Annotation(oboInOwl:hasDbXref "PomBase:mlr") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009000> "A microtubule cytoskeleton organization phenotype observed during mitotic interphase in which cytoplasmic microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.")