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‘closes (#4507)
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@ValWood
ValWood authored Mar 20, 2024
1 parent 104003e commit 4b22008
Showing 1 changed file with 103 additions and 2 deletions.
105 changes: 103 additions & 2 deletions src/ontology/fypo-edit.owl
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Expand Up @@ -8638,13 +8638,24 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008159>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008160>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008161>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008162>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008163>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008164>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008165>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008166>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008167>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008168>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008172>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008173>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008174>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008175>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008176>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008177>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008178>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008180>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008181>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008182>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008183>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008184>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009000>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009001>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009002>))
Expand Down Expand Up @@ -48878,7 +48889,7 @@ AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0002567> "F
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0002567> "This term encompasses both unprocessed RNA transcribed from the centromere outer repeat region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of RNA transcribed from endogenous centromere outer repeat sequences.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0002567> "normal centromeric outer repeat transcript level")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0002567> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001159> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000032> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CL_0000334>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002503> <http://purl.obolibrary.org/obo/SO_0001905>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0002567> <http://purl.obolibrary.org/obo/FYPO_0001317>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0002567> <http://purl.obolibrary.org/obo/FYPO_0008177>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0002568> (abolished protein localization to nuclear periphery)

Expand Down Expand Up @@ -86710,7 +86721,6 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0005095> "
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0005095> "abolished protein localization to chromatin at replication origin")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0005095> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000002> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000501> <http://purl.obolibrary.org/obo/SO_0000296>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0071168>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005095> <http://purl.obolibrary.org/obo/FYPO_0000452>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005095> <http://purl.obolibrary.org/obo/FYPO_0003744>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0005096> (increased duration of protein localization to mitotic spindle pole body during anaphase)

Expand Down Expand Up @@ -131272,6 +131282,14 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008162> "in
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008162> <http://purl.obolibrary.org/obo/FYPO_0000007>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008162> <http://purl.obolibrary.org/obo/FYPO_0001707>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008163> (increased number of nuclear foci)

AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008163> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008163> "2024-03-20T13:41:51Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008163> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of nuclear foci are increased.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008163> "increased number of nuclear foci"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008163> <http://purl.obolibrary.org/obo/FYPO_0004638>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008164> (abnormal protein localization to kinetochore during mitotic M phase)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008164> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abnormal during mitotic M-phase.")
Expand Down Expand Up @@ -131305,6 +131323,14 @@ AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008167> "sensitivite to trolox"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008167> <http://purl.obolibrary.org/obo/FYPO_0000127>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008168> (abolished nuclear foci)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008168> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the nuclear foci are absent.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008168> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008168> "2024-03-20T13:43:19Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008168> "abolished nuclear foci"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008168> <http://purl.obolibrary.org/obo/FYPO_0004638>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008172> (increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008172> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 5 of histone H4 at the silent mating type cassette occurs to a greater extent than normal.")
Expand All @@ -131329,6 +131355,81 @@ AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008174> "increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008174> <http://purl.obolibrary.org/obo/FYPO_0007632>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008175> (normal oxygen consumption)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008175> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the amount of oxygen consumed by cells in a given time is normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008175> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008175> "2024-03-20T11:26:08Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008175> "normal oxygen consumption"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008175> <http://purl.obolibrary.org/obo/FYPO_0001312>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008176> (increased centromeric inner repeat transcript level)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008176> "A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromere inner repeat region are present at greater levels than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008176> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008176> "2024-03-20T11:28:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008176> "This term encompasses both unprocessed RNA transcribed from the centromere inner repeat region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of RNA transcribed from endogenous centromere inner repeat sequences. For levels of RNA transcribed from an exogenous reporter gene placed in the inner repeat region, consider 'decreased chromatin silencing at centromere outer repeat region' (FYPO:0003412).")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008176> "increased centromeric inner repeat transcript level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008176> <http://purl.obolibrary.org/obo/FYPO_0004982>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008177> (normal centromeric RNA level during vegetative growth)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008177> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNAs transcribed from the centromere measured in a cell is normal (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008177> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008177> "2024-03-20T11:32:16Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008177> "This term encompasses both unprocessed RNA transcribed from the centromere t region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of endogenous RNAs.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008177> "normal centromeric RNA level during vegetative growth"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008177> <http://purl.obolibrary.org/obo/FYPO_0001317>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008178> (normal centromeric inner repeat transcript level)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008178> "A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromere inner repeat region are present at normal levels (i.e. indistinguishable from wild-type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008178> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008178> "2024-03-20T11:34:30Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008178> "This term encompasses both unprocessed RNA transcribed from the centromere inner repeat region and siRNAs derived by dicer-mediated processing of the primary transcripts. Use this term only for levels of RNA transcribed from endogenous centromere inner repeat sequences.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008178> "normal centromeric inner repeat transcript level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008178> <http://purl.obolibrary.org/obo/FYPO_0008177>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008180> (decreased RNA polymerase II CTD binding)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008180> "A molecular function phenotype in which binding by a gene product to the RNA polymerase II CTD domain is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008180> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008180> "2024-03-20T11:47:57Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008180> "decreased RNA polymerase II CTD binding"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008180> <http://purl.obolibrary.org/obo/FYPO_0001092>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008181> (decreased RNA polymerase II CTD Ser5-P binding)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008181> "A molecular function phenotype in which binding by a gene product to the RNA polymerase II CTD domain phosphorylated serine 5 is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008181> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008181> "2024-03-20T11:51:41Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008181> "decreased RNA polymerase II CTD Ser5-P binding"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008181> <http://purl.obolibrary.org/obo/FYPO_0008180>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008182> (decreased Spt5-CTD binding)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008182> "A molecular function phenotype in which binding by a gene product to the Spt5 CTD domain is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008182> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008182> "2024-03-20T11:55:25Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008182> "decreased Spt5-CTD binding"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008182> <http://purl.obolibrary.org/obo/FYPO_0001092>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008183> (decreased histone H3-S10 phosphorylation during vegetative growth)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008183> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H3-S10 phosphorylation is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008183> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008183> "2024-03-20T12:04:24Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008183> "decreased histone H3-S10 phosphorylation during vegetative growth"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008183> <http://purl.obolibrary.org/obo/FYPO_0002591>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008184> (decreased protein localization to processome)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008184> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the processome is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008184> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008184> "2024-03-20T12:10:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008184> "decreased protein localization to processome"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008184> <http://purl.obolibrary.org/obo/FYPO_0000443>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009000> (decreased rate of cytoplasmic microtubule polymerization during mitotic interphase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36633091") Annotation(oboInOwl:hasDbXref "PomBase:mlr") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009000> "A microtubule cytoskeleton organization phenotype observed during mitotic interphase in which cytoplasmic microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.")
Expand Down

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