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closes #4515; closes #4512; closes #4512; closes #4511; closes #4510 (#…
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…4516)
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@ValWood
ValWood authored Mar 26, 2024
1 parent 588fb71 commit 1a29f83
Showing 1 changed file with 40 additions and 5 deletions.
45 changes: 40 additions & 5 deletions src/ontology/fypo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -8644,13 +8644,17 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008165>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008166>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008167>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008168>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008169>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008170>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008171>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008172>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008173>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008174>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008175>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008176>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008177>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008178>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008179>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008180>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008181>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008182>))
Expand Down Expand Up @@ -58100,7 +58104,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0003181> "ab
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0003181> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0042138>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0003181> <http://purl.obolibrary.org/obo/FYPO_0003564>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0003182> (unequal meiotic sister chromatid segregation)
# Class: <http://purl.obolibrary.org/obo/FYPO_0003182> (unequal meiotic sister chromatid segregation in meiosis I)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10440376") Annotation(oboInOwl:hasDbXref "PomBase:mah") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0003182> "A cellular process phenotype in which sister chromatids are not segregated equally to the two spindle poles in the second meiotic nuclear division.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0003182> "midori")
Expand All @@ -58117,7 +58121,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRel
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0003182> "chromosome nondisjunction during meiosis II")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0003182> "meiosis II nondisjunction")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0003182> "FYPO:0003182")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0003182> "unequal meiotic sister chromatid segregation")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0003182> "unequal meiotic sister chromatid segregation in meiosis I")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0003182> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0045144>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0003182> <http://purl.obolibrary.org/obo/FYPO_0000925>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0003182> <http://purl.obolibrary.org/obo/FYPO_0005509>)
Expand Down Expand Up @@ -73456,9 +73460,8 @@ AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYP
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0004216> "abolished histone H4-K20 monomethylation during mitotic cell cycle")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0004216> "FYPO:0004216")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0004216> "abolished histone H4-K20 monomethylation during vegetative growth")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0004216> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000002> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0034771>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004216> <http://purl.obolibrary.org/obo/FYPO_0002565>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004216> <http://purl.obolibrary.org/obo/FYPO_0004215>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004216> <http://purl.obolibrary.org/obo/FYPO_0008179>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0004217> (abolished histone H4-K20 dimethylation during vegetative growth)

Expand Down Expand Up @@ -73568,7 +73571,6 @@ AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYP
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0004223> "increased histone H4-K20 monomethylation during mitotic cell cycle")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0004223> "FYPO:0004223")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0004223> "increased histone H4-K20 monomethylation during vegetative growth")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0004223> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0034771> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002092> <http://purl.obolibrary.org/obo/GO_0072690>))))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004223> <http://purl.obolibrary.org/obo/FYPO_0000869>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004223> <http://purl.obolibrary.org/obo/FYPO_0004215>)

Expand Down Expand Up @@ -131295,6 +131297,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008163> <http://purl.obolibrary
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008164> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abnormal during mitotic M-phase.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008164> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008164> "2024-03-20T09:26:50Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0008164> "FYPO:0008164")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008164> "abnormal protein localization to kinetochore during mitotic M phase"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008164> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0000087>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0034501>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008164> <http://purl.obolibrary.org/obo/FYPO_0001268>)
Expand Down Expand Up @@ -131331,6 +131334,30 @@ AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008168> "abolished nuclear foci"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008168> <http://purl.obolibrary.org/obo/FYPO_0004638>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008169> (normal actin cable morphology during mitotic interphase)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008169> "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, and structure of actin cables are normal during mitotic interphase (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008169> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008169> "2024-03-26T14:43:16Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008169> "normal actin cable morphology during mitotic interphase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008169> <http://purl.obolibrary.org/obo/FYPO_0002487>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008170> (decreased cyclin-dependent protein kinase activity)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008170> "A molecular function phenotype in which the observed rate of a cyclin-dependent protein kinase activity is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008170> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008170> "2024-03-26T14:46:00Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008170> "decreased cyclin-dependent protein kinase activity"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008170> <http://purl.obolibrary.org/obo/FYPO_0001382>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008171> (increased nuclear pore complex clustering)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35354597") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008171> "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the nuclear pore complexes are more clustered together than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008171> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008171> "2024-03-26T14:48:45Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008171> "increased nuclear pore complex clustering"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008171> <http://purl.obolibrary.org/obo/FYPO_0001321>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008172> (increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008172> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 5 of histone H4 at the silent mating type cassette occurs to a greater extent than normal.")
Expand Down Expand Up @@ -131390,6 +131417,14 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008178> "
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008178> "normal centromeric inner repeat transcript level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008178> <http://purl.obolibrary.org/obo/FYPO_0008177>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008179> (decreased histone H4-K20 monomethylation during vegetative growth)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15550243") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008179> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which monomethylation of lysine at position 20 of histone H4 is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008179> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008179> "2024-03-26T14:54:04Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008179> "decreased histone H4-K20 monomethylation during vegetative growth"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008179> <http://purl.obolibrary.org/obo/FYPO_0004215>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008180> (decreased RNA polymerase II CTD binding)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008180> "A molecular function phenotype in which binding by a gene product to the RNA polymerase II CTD domain is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.")
Expand Down

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