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‘closes (#4554)
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@ValWood
ValWood authored May 20, 2024
1 parent d1d5be3 commit 19af6bd
Showing 1 changed file with 132 additions and 3 deletions.
135 changes: 132 additions & 3 deletions src/ontology/fypo-edit.owl
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Expand Up @@ -8692,6 +8692,19 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008214>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008215>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008216>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008217>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008218>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008219>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008220>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008221>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008222>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008223>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008224>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008225>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008226>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008227>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008228>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008229>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008231>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009000>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009001>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009002>))
Expand Down Expand Up @@ -15383,8 +15396,6 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRel
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000333> "increased duration of mitotic G1 phase during vegetative growth")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000333> "increased duration of mitotic G1 phase progression")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000333> "mitotic cell cycle delay in G1")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SGD:phenotype_annotation") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000333> "mitotic cell cycle progression in G1 phase: delayed")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SGD:phenotype_annotation") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0000333> "mitotic cell cycle progression in G1 phase: increased duration")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0000333> "FYPO:0000333")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0000333> "A G1/S delay may indicate that a checkpoint, such as the cell size checkpoint or the G1/S DNA damage checkpoint, is activated. Checkpoint activation can be tested using checkpoint kinase mutants.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0000333> "mitotic G1/S phase transition delay")
Expand Down Expand Up @@ -131678,7 +131689,7 @@ AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_000
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008208> "2024-05-03T12:03:19Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008208> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008208> "abolished protein neddylation during vegetative growth"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008208> <http://purl.obolibrary.org/obo/FYPO_0000544>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008208> <http://purl.obolibrary.org/obo/FYPO_0005819>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008209> (normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth)

Expand Down Expand Up @@ -131762,6 +131773,124 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008217> "in
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008217> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000912> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0019104>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008217> <http://purl.obolibrary.org/obo/FYPO_0008216>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008218> (abnormal mitotic S/G2 phase transition)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10947840") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008218> "A cellular process phenotype in which a cell does not execute a mitotic S/G2 cell cycle phase transition normally.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008218> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008218> "2024-05-20T05:34:01Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008218> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008218> "abnormal mitotic S/G2 phase transition"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008218> <http://purl.obolibrary.org/obo/FYPO_0005275>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008219> (increased histone H3-K56 acetylation in transcribed regions during mitotic G2/M phase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27268234") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008219> "A cellular process phenotype observed during the G2/M phase of the mitotic cell cycle in which acetylation of lysine at position 56 of histone H3 in regions of the genome that are actively transcribed occurs to a greater extent than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008219> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008219> "2024-05-20T05:41:42Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008219> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008219> "increased histone H3-K56 acetylation in transcribed regions during mitotic G2/M phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008219> <http://purl.obolibrary.org/obo/FYPO_0002370>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008220> (increased histone H4-K20 monomethylation in transcribed regions during mitotic G2/M phase)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008220> "A cellular process phenotype observed in the G2/M phase of the mitotic cycle in which monomethylation of lysine at position 20 of histone H4 in regions of the genome that are actively transcribed occurs to a greater extent than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008220> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008220> "2024-05-20T05:48:50Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008220> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008220> "increased histone H4-K20 monomethylation in transcribed regions during mitotic G2/M phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008220> <http://purl.obolibrary.org/obo/FYPO_0004223>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008221> (normal histone H3-K56 acetylation during mitotic G2/M phase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27268234") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008221> "A cellular process phenotype observed during the G2/M phase of the mitotic cell cycle in which acetylation of lysine at position 56 of histone H3 is normal (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008221> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008221> "2024-05-20T05:51:36Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008221> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008221> "normal histone H3-K56 acetylation during mitotic G2/M phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008221> <http://purl.obolibrary.org/obo/FYPO_0008160>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008222> (normal histone H4-K20 monomethylation during mitotic G2/M phase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27268234") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008222> "A cellular process phenotype observed during the G2/M phase of the mitotic cell cycle in which monomethylation of lysine at position 20 of histone H4 is normal (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008222> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008222> "2024-05-20T05:56:48Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008222> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008222> "normal histone H4-K20 monomethylation during mitotic G2/M phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008222> <http://purl.obolibrary.org/obo/FYPO_0004220>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008223> (normal histone H4-K20 trimethylation during mitotic G2/M phase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27268234") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008223> "A cellular process phenotype observed during the G2/M phase of the mitotic cell cycle in which trimethylation of lysine at position 20 of histone H4 is normal (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008223> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008223> "2024-05-20T05:58:53Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008223> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008223> "normal histone H4-K20 trimethylation during mitotic G2/M phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008223> <http://purl.obolibrary.org/obo/FYPO_0004220>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008224> (decreased histone H4-K20 trimethylation during mitotic G2/M phase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27268234") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008224> "A cellular process phenotype observed during the G2/M phase of the mitotic cell cycle in which trimethylation of lysine at position 20 of histone H4 is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008224> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008224> "2024-05-20T06:01:40Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008224> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008224> "decreased histone H4-K20 trimethylation during mitotic G2/M phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008224> <http://purl.obolibrary.org/obo/FYPO_0004224>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008225> (increased cellular phosphate (Pi) level)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37949217") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008225> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphate (Pi) measured in a cell (total or free) is higher than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008225> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008225> "2024-05-20T06:11:57Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008225> "fission _yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008225> "increased cellular phosphate (Pi) level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008225> <http://purl.obolibrary.org/obo/FYPO_0001330>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008226> (increased total cellular phosphate (Pi) level)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37949217") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008226> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of phosphate (Pi) measured in a cell is higher than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008226> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008226> "2024-05-20T06:19:32Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008226> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008226> "increased total cellular phosphate (Pi) level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008226> <http://purl.obolibrary.org/obo/FYPO_0008225>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008227> (increased free cellular phosphate (Pi) level)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37949217") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008227> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of free phosphate (Pi) measured in a cell is higher than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008227> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008227> "2024-05-20T06:22:59Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008227> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008227> "increased free cellular phosphate (Pi) level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008227> <http://purl.obolibrary.org/obo/FYPO_0008225>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008228> (abnormal phosphate export)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37949217") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008228> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the export of phosphate ions (Pi) out of a cell is abnormal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008228> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008228> "2024-05-20T06:31:25Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008228> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008228> "abnormal phosphate export"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008228> <http://purl.obolibrary.org/obo/FYPO_0005973>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008229> (sensitive to phosphate (Pi))

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008229> "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to phosphate (Pi). Cells stop growing (and may die) at a concentration of phosphate that allows wild type cells to grow.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008229> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008229> "2024-05-20T06:42:53Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008229> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008229> "sensitive to phosphate (Pi)"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008229> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001551> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002503> <http://purl.obolibrary.org/obo/CHEBI_26020>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008229> <http://purl.obolibrary.org/obo/FYPO_0000127>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008231> (increased lactate dehydrogenase activity)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37787465") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008231> "A molecular function phenotype in which the observed rate of lactate dehydrogenase activity is increased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008231> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008231> "2024-05-20T06:54:47Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008231> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008231> "increased lactate dehydrogenase activity"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008231> <http://purl.obolibrary.org/obo/FYPO_0000662>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009000> (decreased rate of cytoplasmic microtubule polymerization during mitotic interphase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36633091") Annotation(oboInOwl:hasDbXref "PomBase:mlr") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009000> "A microtubule cytoskeleton organization phenotype observed during mitotic interphase in which cytoplasmic microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.")
Expand Down

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