Bio/chemical models, mostly in COPASI format, also SBML and OMEX
This is a repository for models that I use in my research and teaching. Many have been used in COPASI tutorials, others are used as benchmarks, while others are historical models, published decades ago and which I have encoded in a format that can be used by modern simulators.
Most models here are in COPASI's own format *.cps. Some may be also encoded in SBML, a widely used standard for systems biology models. Others can also be part of an OMEX format file, also known as COMBINE archive (which are zip files containing several model and simulation files). All of these files can be loaded into COPASI and from there they can be exported to several standards (including SBML and OMEX). Other packages are able to read SBML and OMEX, so these models are not restricted to COPASI.
Most models contain metadata that links them to their original publications and identifies their components, etc. Some may lack such metadata but I strive to include it (in the spirit of MIRIAM). All models also include comments that identify their origin, purpose, etc. (though, to read these comments they have to be loaded into COPASI).
Models included here are licensed with CC-Zero license unless they were derived from sources that imposed other restrictions. Most were either created by me or were edited from other public sources (such as Biomodels)