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Session Info.txt
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R version 4.1.2 (2021-11-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] grid parallel stats4 stats graphics grDevices utils datasets
[9] methods base
other attached packages:
[1] xgboost_1.6.0.1 rpart_4.1.16 ipred_0.9-13
[4] catboost_1.1.1 pwr_1.3-0 effectsize_0.7.0
[7] psych_2.2.5 Hmisc_4.7-0 Formula_1.2-4
[10] pvclust_2.2-0 clValid_0.7 mclust_5.4.10
[13] clustertend_1.6 NbClust_3.0.1 dimRed_0.2.5
[16] DRR_0.0.4 CVST_0.2-3 Rdimtools_1.0.9
[19] NMF_0.24.0 rngtools_1.5.2 pkgmaker_0.32.2
[22] registry_0.5-1 umap_0.2.8.0 dbscan_1.1-10
[25] Rtsne_0.16 pheatmap_1.0.12 dendextend_1.15.2
[28] polyPK_3.1.0 xlsx_0.6.5 lmms_1.3.3
[31] timeOmics_1.6.0 toxcms_1.0.3 DRomics_2.4-0
[34] DESeq2_1.34.0 timecourse_1.66.0 mixOmics_6.18.1
[37] MetStaT_1.0 abind_1.4-5 drc_3.0-1
[40] glmmsr_0.2.3 MWASTools_1.18.0 multcomp_1.4-25
[43] TH.data_1.1-1 pairwiseAdonis_0.0.1 leaps_3.1
[46] gWQS_3.0.4 rsample_0.1.1 pROC_1.18.0
[49] tdfdr_0.1 Boruta_7.0.0 cwhmisc_6.6
[52] glmnet_4.1-4 party_1.3-10 strucchange_1.5-2
[55] zoo_1.8-12 modeltools_0.2-23 permimp_1.0-2
[58] ropls_1.26.4 klaR_1.7-1 ggforce_0.3.3
[61] HotellingEllipse_1.1.0 ClassDiscovery_3.4.0 oompaBase_3.2.9
[64] OutlierDetection_0.1.1 pmd_0.2.1 corrr_0.4.3
[67] stringi_1.7.6 compositions_2.0-4 robCompositions_2.3.1
[70] ggraph_2.0.5 gplots_3.1.3 clusterSim_0.50-1
[73] MASS_7.3-60 DiffCorr_0.4.2 multtest_2.50.0
[76] fdrtool_1.2.17 MAFFIN_1.0.0 ABCstats_1.0.0
[79] affy_1.72.0 lmerTest_3.1-3 randomForest_4.7-1.1
[82] pls_2.8-0 kernlab_0.9-31 pamr_1.56.1
[85] survival_3.3-1 caret_6.0-92 gamm4_0.2-6
[88] lme4_1.1-29 lmm2met_1.0 CompoundDb_0.99.8
[91] AnnotationFilter_1.18.0 piggyback_0.1.3 curl_4.3.2
[94] MetaboAnnotation_1.1.1 massdataset_1.0.5 masstools_1.0.8
[97] metid_1.2.13 mWISE_0.1.0 xMSannotator_1.3.2
[100] Rdisop_1.54.0 flashClust_1.01-2 KEGGREST_1.34.0
[103] rjson_0.2.21 png_0.1-7 SSOAP_0.9-0
[106] doSNOW_1.0.20 snow_0.4-4 RCurl_1.98-1.5
[109] WGCNA_1.71 fastcluster_1.2.3 dynamicTreeCut_1.63-1
[112] R2HTML_2.3.3 XML_3.99-0.8 forcats_0.5.1
[115] purrr_0.3.4 readr_2.1.2 tidyr_1.2.0
[118] tidyverse_1.3.1 RAMClustR_1.2.4 corrplot_0.92
[121] ggsci_2.9 RSEIS_4.1-1 rafalib_1.0.0
[124] factoextra_1.0.7 MetabolomicsBasics_1.2 pcpr2_0.0.0.1
[127] gPCA_1.0 proBatch_1.10.0 cluster_2.1.3
[130] tibble_3.2.1 NormalizeMets_0.25 BatchCorrMetabolomics_0.1.14
[133] MetNormalizer_1.3.02 TIGERr_1.0.0 statTarget_1.24.0
[136] openxlsx_4.2.5 batchCorr_0.2.5 notame_0.0.5
[139] magrittr_2.0.3 pmp_1.6.0 fpc_2.2-9
[142] FactoMineR_2.4 RUVSeq_1.28.0 edgeR_3.36.0
[145] limma_3.50.3 EDASeq_2.28.0 ShortRead_1.52.0
[148] GenomicAlignments_1.30.0 SummarizedExperiment_1.24.0 MatrixGenerics_1.6.0
[151] matrixStats_0.62.0 Rsamtools_2.10.0 GenomicRanges_1.46.1
[154] Biostrings_2.62.0 GenomeInfoDb_1.30.1 XVector_0.34.0
[157] IRanges_2.28.0 dbnorm_0.2.2 ProteoMM_1.12.0
[160] ica_1.0-2 waveslim_1.8.2 WaveICA2.0_0.1.0
[163] WaveICA_0.1.0 missMethods_0.3.0 imputeR_2.2
[166] tWLSA_1.0 StatTools_0.0.915 mice_3.14.0
[169] MsCoreUtils_1.6.2 imputeLCMD_2.1 impute_1.68.0
[172] pcaMethods_1.86.0 norm_1.0-10.0 tmvtnorm_1.5
[175] gmm_1.6-6 sandwich_3.0-1 Matrix_1.4-1
[178] mvtnorm_1.1-3 MAI_1.0.0 MetProc_1.0.1
[181] missForest_1.5 vegan_2.6-2 lattice_0.20-45
[184] permute_0.9-7 RColorBrewer_1.1-3 cpc_0.1.0
[187] pander_0.6.5 signal_0.7-7 ncGTW_1.8.0
[190] warpgroup_0.1.0.9001 miscTools_0.6-26 reshape2_1.4.4
[193] plyr_1.8.7 igraph_1.3.1 dtw_1.22-3
[196] proxy_0.4-27 MsFeatures_1.2.0 doParallel_1.0.17
[199] iterators_1.0.14 foreach_1.5.2 IPO_1.20.0
[202] CAMERA_1.50.0 rsm_2.10.3 gridExtra_2.3
[205] ggplot2_3.4.4 xcms_3.17.3 BiocParallel_1.28.3
[208] MetaboAnalystR_3.0.2 Autotuner_1.7.0 MSnbase_2.20.1
[211] ProtGenerics_1.26.0 S4Vectors_0.32.4 mzR_2.28.0
[214] Rcpp_1.0.8.3 Biobase_2.54.0 BiocGenerics_0.40.0
[217] data.table_1.14.2 randomizr_0.22.0 stringr_1.4.0
[220] tuple_0.4-02 pbapply_1.5-0 mgcv_1.8-40
[223] nlme_3.1-157 dplyr_1.1.4 crayon_1.5.1
loaded via a namespace (and not attached):
[1] insight_0.17.1 future_1.32.0 circlize_0.4.15
[4] ncdf4_1.19 maotai_0.2.4 desc_1.4.1
[7] rprojroot_2.0.3 mnormt_2.1.0 mathjaxr_1.6-0
[10] fastmap_1.1.0 spatstat.geom_2.4-0 furrr_0.3.0
[13] siggenes_1.68.0 TFisher_0.2.0 ggrepel_0.9.1
[16] nloptr_2.0.3 rARPACK_0.11-0 visNetwork_2.1.0
[19] rvest_1.0.2 assertthat_0.2.1 xtable_1.8-4
[22] numDeriv_2016.8-1.1 evaluate_0.15 htmlwidgets_1.5.4
[25] rstudioapi_0.13 latticeExtra_0.6-29 chron_2.3-57
[28] hardhat_1.2.0 robustHD_0.7.2 RSpectra_0.16-1
[31] circular_0.4-95 biomaRt_2.50.3 ChemometricsWithR_0.1.13
[34] BiocIO_1.4.0 zip_2.2.0 userfriendlyscience_0.7.2
[37] xfun_0.31 Rttf2pt1_1.3.10 miniUI_0.1.1.1
[40] gtools_3.9.2.1 splines_4.1.2 Cubist_0.4.0
[43] expm_0.999-6 spatstat.core_2.4-4 future.apply_1.10.0
[46] DEoptimR_1.0-11 progress_1.2.2 testthat_3.1.4
[49] lavaan_0.6-11 knitr_1.39 globals_0.16.2
[52] graphlayouts_0.8.0 MetaboCoreUtils_1.2.0 MultiAssayExperiment_1.20.0
[55] backports_1.4.1 lmeSplines_1.1-12 tools_4.1.2
[58] Rcsdp_0.1.57.2 httr_1.4.3 qqconf_1.2.3
[61] RANN_2.6.1 hashmap_0.2.2 ComplexHeatmap_2.10.0
[64] pcaPP_2.0-1 pracma_2.3.8 htmlTable_2.4.0
[67] DiagrammeR_1.0.10 wesanderson_0.3.6 GlobalOptions_0.1.2
[70] sessioninfo_1.2.2 tidygraph_1.2.1 qvalue_2.26.0
[73] tensor_1.5 timechange_0.1.1 pacman_0.5.1
[76] devtools_2.4.3 JADE_2.0-3 pvca_1.34.0
[79] cli_3.6.2 patchwork_1.1.1 jpeg_0.1-9
[82] yulab.utils_0.0.4 goftest_1.2-3 preprocessCore_1.56.0
[85] annotate_1.72.0 diffuStats_1.14.0 ggplotify_0.1.0
[88] promises_1.2.0.1 pillar_1.9.0 parameters_0.18.1
[91] prettyunits_1.1.1 ldbod_0.1.2 VIM_6.1.1
[94] bayesm_3.1-4 crmn_0.0.21 caTools_1.18.2
[97] bit64_4.0.5 geneplotter_1.72.0 precrec_0.12.9
[100] itertools_0.1-3 rtf_0.4-14.1 restfulr_0.0.14
[103] rtracklayer_1.54.0 withr_2.5.0 rainbow_3.6
[106] QFeatures_1.4.0 RcppParallel_5.1.5 binr_1.1
[109] dr4pl_2.0.0 BiocManager_1.30.18 GenomicFeatures_1.46.5
[112] Rdpack_2.3.1 RcppArmadillo_0.11.1.1.0 e1071_1.7-11
[115] BiasedUrn_1.07 foreign_0.8-82 ranger_0.13.1
[118] SuppDists_1.1-9.7 pkgconfig_2.0.3 spatstat.utils_2.3-1
[121] scatterplot3d_0.3-41 graph_1.72.0 carData_3.0-5
[124] glm2_1.2.1 prabclus_2.3-2 lubridate_1.9.3
[127] spatstat.data_2.2-0 memoise_2.0.1 genefilter_1.76.0
[130] xml2_1.3.3 generics_0.1.2 vsn_3.62.0
[133] scales_1.2.0 gmp_0.6-5 later_1.3.0
[136] ROC_1.70.0 zlibbioc_1.40.0 hwriter_1.3.2.1
[139] DT_0.23 plsdepot_0.1.17 XMLSchema_0.7-0
[142] usethis_2.1.6 plotly_4.10.0 bitops_1.0-7
[145] MALDIquant_1.21 coda_0.19-4 kableExtra_1.3.4
[148] clue_0.3-61 lazyeval_0.2.2 inum_1.0-4
[151] minqa_1.2.4 farver_2.1.0 codetools_0.2-18
[154] htmltools_0.5.2 prodlim_2019.11.13 fastmatch_1.1-3
[157] depth_2.1-1.1 R.oo_1.24.0 mzID_1.32.0
[160] openssl_2.0.2 lsei_1.3-0 shapes_1.2.6
[163] fansi_1.0.3 propr_4.2.6 gower_1.0.0
[166] boot_1.3-28 RBGL_1.70.0 Spectra_1.5.10
[169] lifecycle_1.0.4 vctrs_0.6.5 cachem_1.0.6
[172] processx_3.5.2 AnnotationDbi_1.56.2 highr_0.9
[175] rappdirs_0.3.3 ber_4.0 GO.db_3.14.0
[178] GetoptLong_1.0.5 shape_1.4.6 base64enc_0.1-3
[181] forestplot_2.0.1 fda_6.0.3 ff_4.0.7
[184] reprex_2.0.1 nnet_7.3-17 KEGGgraph_1.54.0
[187] munsell_0.5.0 cowplot_1.1.1 NADA_1.6-1.1
[190] deldir_1.0-6 ggridges_0.5.6 datawizard_0.4.1
[193] spatstat_2.3-4 flexmix_2.3-18 ppcor_1.1
[196] fgsea_1.20.0 recipes_0.2.0 fs_1.5.2
[199] rlang_1.1.2 truncnorm_1.0-8 fds_1.8
[202] labelled_2.9.1 oompaData_3.1.2 pbivnorm_0.6.0
[205] scrime_1.3.5 CVXR_1.0-10 pkgbuild_1.3.1
[208] digest_0.6.29 checkmate_2.1.0 rmarkdown_2.14
[211] cvTools_0.3.2 broom_0.8.0 hdrcde_3.4
[214] yaml_2.3.5 haven_2.5.0 coin_1.4-2
[217] proto_1.0.0 GenomeInfoDbData_1.2.7 polyclip_1.10-0
[220] svglite_2.1.0 rrcov_1.7-0 callr_3.7.0
[223] libcoin_1.0-9 questionr_0.7.7 remotes_2.4.2
[226] lmtest_0.9-40 lava_1.6.10 DelayedArray_0.20.0
[229] tweenr_1.0.2 ModelMetrics_1.2.2.2 filelock_1.0.2
[232] R.utils_2.11.0 scoringRules_1.0.1 bit_4.0.4
[235] vroom_1.5.7 robustbase_0.95-0 shiny_1.7.1
[238] tzdb_0.3.0 colorspace_2.0-3 viridisLite_0.4.0
[241] GPArotation_2022.4-1 xlsxjars_0.6.1 diptest_0.77-0
[244] DBI_1.1.2 mclustcomp_0.3.3 C50_0.1.6
[247] timeDate_3043.102 parallelly_1.35.0 class_7.3-20
[250] SCRT_1.3.1 askpass_1.1 pscl_1.5.5
[253] locfit_1.5-9.5 glue_1.6.2 listenv_0.8.0
[256] mutoss_0.1-12 plotrix_3.8-2 ks_1.13.5
[259] spatstat.linnet_2.3-2 AUC_0.3.2 data.tree_1.0.0
[262] ggfortify_0.4.14 deSolve_1.32 spatstat.sparse_2.1-1
[265] metap_1.8 rJava_1.0-6 BiocFileCache_2.2.1
[268] cellranger_1.1.0 doRNG_1.8.2 tensorA_0.36.2
[271] sqldf_0.4-11 R6_2.5.1 gridBase_0.4-7
[274] spatstat.random_2.2-0 estimability_1.3 gtable_0.3.0
[277] webshot_0.5.3 tidyselect_1.2.0 ChemmineR_3.46.0
[280] partykit_1.2-15 systemfonts_1.0.4 zCompositions_1.4.0-1
[283] vcd_1.4-10 GGally_2.1.2 Rgraphviz_2.38.0
[286] kohonen_3.0.11 corpcor_1.6.10 brio_1.1.3
[289] mime_0.12 httpuv_1.6.5 utf8_1.2.2
[292] RcppDE_0.1.6 jsonlite_1.8.0 modelr_0.1.8
[295] emmeans_1.7.4-1 ellipsis_0.3.2 reshape_0.8.9
[298] sva_3.42.0 extrafontdb_1.0 blob_1.2.3
[301] ps_1.6.0 Rwave_2.6-0 perry_0.3.1
[304] MBESS_4.9.0 viridis_0.6.2 rgl_0.109.2
[307] bayestestR_0.12.1 hms_1.1.1 pdist_1.2.1
[310] combinat_0.0-8 nspmix_1.5-0 gdata_2.18.0.1
[313] ellipse_0.4.3 car_3.0-13 rlist_0.4.6.2
[316] compiler_4.1.2 dbplyr_2.2.0 plotROC_2.3.0
[319] extrafont_0.18 pkgload_1.2.4 minpack.lm_1.2-2
[322] gsubfn_0.7 gridGraphics_0.5-1 doMC_1.3.5
[325] RSQLite_2.2.14 Rmpfr_0.8-9 RPMG_2.2-3
[328] crch_1.0-4 affyio_1.64.0 rbibutils_2.2.8
[331] rio_0.5.29 rsvg_2.3.1 R.methodsS3_1.8.1
[334] readxl_1.4.0 sn_2.0.2 laeken_0.5.2
[337] sp_1.5-0 ade4_1.7-19 rsconnect_0.8.26
[340] MassSpecWavelet_1.60.1 marray_1.72.0 KernSmooth_2.23-20
[343] pkr_0.1.2 aroma.light_3.24.0 reticulate_1.26-9000