NAMESPACE

# Generated by roxygen2: do not edit by hand

export(UNMASC_definitions)
export(gen_simulated_data)
export(import_VCFs)
export(prep_UNMASC_VCF)
export(run_AF_SEG)
export(run_UNMASC)
export(run_hsMetric_clustRank)
export(simulate_BAF)
import(foreach)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(Rcpp,sourceCpp)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,PileupParam)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,pileup)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(doParallel,registerDoParallel)
importFrom(emdbook,rbetabinom)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(scales,hue_pal)
importFrom(seqTools,char2ascii)
importFrom(smarter,name_change)
importFrom(smarter,smart_WT)
importFrom(smarter,smart_df)
importFrom(smarter,smart_hist)
importFrom(smarter,smart_merge)
importFrom(smarter,smart_mkdir)
importFrom(smarter,smart_progress)
importFrom(smarter,smart_reqNames)
importFrom(smarter,smart_rmcols)
importFrom(smarter,smart_table)
importFrom(stats,chisq.test)
importFrom(stats,density)
importFrom(stats,fisher.test)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,rnbinom)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
useDynLib(UNMASC)