Show links for genomics information

[Don-Isdale]

For Feature which contain genomics identifiers, show links to the corresponding web-sites

For example, given a Feature which contains this data in the 'Additional Information' values :

CDCFrontier_g3_Genes:chr1	Ca1g150700	18465369	18471162
Dbxref=Gene3D G3DSA 1.10.225.10,
Gene3D G3DSA 2.40.70.10,
InterPro IPR001461,
InterPro IPR001969,
InterPro IPR007856,
InterPro IPR008138,
InterPro IPR008139,
InterPro IPR011001,
InterPro IPR021109,
PANTHER PTHR13683,
PANTHER PTHR13683 SF85,
PRINTS PR00792,
Pfam PF00026,
Pfam PF03489,
Pfam PF05184,
Prosite PS00141,
Prosite PS50015,
Superfamily SSF47862,
Superfamily SSF50630;Ontology_term=GO 0004190,
GO 0006508,
GO 0006629;
Note=aspartic proteinase A1-like isoform X3 [Glycine max]; IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain); GO 0004190 (aspartic-type endopeptidase activity), GO 0006508 (proteolysis), GO 0006629 (lipid metabolic process);
  geneFamily=legfed_v1_0.L_6F8T8B

Display links to these sites :

https://www.ebi.ac.uk/interpro/entry/cathgene3d/G3DSA:1.10.225.10

https://www.pantherdb.org/panther/familyList.do?searchType=basic&fieldName=all&organism=all&fieldValue=PTHR13683&listType=6

https://phytozome-next.jgi.doe.gov/report/gene/Ptrichocarpa_v4_1/Potri.006G068900

https://www.ebi.ac.uk/interpro/entry/prints/PR00792/

http://www.ebi.ac.uk/QuickGo/term/GO:0006508

https://prosite.expasy.org/PS51257

https://www.ebi.ac.uk/interpro/entry/pfam/PF00026/

https://www.ebi.ac.uk/interpro/entry/ssf/SSF47862/

https://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF47862

https://prosite.expasy.org/PS50015

https://www.ebi.ac.uk/interpro/entry/InterPro/IPR021109/

https://conekt.legumeinfo.org/tree/find_forLIS/legfed_v1_0.L_6F8T8B_tree

This can be done in the External Lookup panel, and may be moved to a different location for a more ergonomic user work-flow.

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Those 'Additional Information' fields could be displayed and filtered as for Trait or Ontology,
which would enable users to select which identifiers they wished to view, i.e. filtering the displayed features,
and colouring the identifiers so they can see the regions in which identifiers of interest are clustered.

The addition would be minor - just changing the field of Feature which is used as the field for selection / filtering / display.
e.g. for Trait and Ontology the fields are currently Feature.values.Trait and Feature.values.Ontology.
This could be varied by user input, selecting one or more of the identifiers from Feature.values['Additional Information'].

The difference between the functionality of Trait and Ontology can influence which is used for the various identifiers;
Ontology has ID : Name, and a hierarchical structure; genomic annotation identifiers mostly have ID:name; not hierarchical, just a list.