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VCF Dataset directory misnaming causes server to exit #379

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Don-Isdale opened this issue May 28, 2024 · 0 comments
Open

VCF Dataset directory misnaming causes server to exit #379

Don-Isdale opened this issue May 28, 2024 · 0 comments

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@Don-Isdale
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The server exited after the following error, which was caused by the VCF dataset directory in $vcfDir not matching the VCF datasetId created in Pretzel via spreadsheet upload.


server log extracts :

/app/lb3app/scripts/vcfGenotypeLookup.bash: line 440: cd: .../vcf/Fieldpea-SeedPurity: No such file or directory

  • echo Error: 0 'VCF dataset dir is not configured,' Fieldpea-SeedPurity, PWD=/

child process exited with code 0
cbWrap Error: Error: 0 VCF dataset dir is not configured, Fieldpea-SeedPurity, PWD=/

Error: Error: 0 VCF dataset dir is not configured, Fieldpea-SeedPurity, PWD=/


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