Revert "Fix indentation in README."

This reverts commit de702dc.
phyloviz · Feb 17, 2024 · 9162ef1 · 9162ef1
1 parent de702dc
commit 9162ef1
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Showing 3 changed files with 14 additions and 24 deletions.
diff --git a/README.md b/README.md
@@ -87,18 +87,18 @@ Check the initialization step in the [`example.sh`](scripts/example/example.sh)
 
 To run the example,
 
-    export TOKEN="YOUR_TOKEN"
-    export USER_ID="YOUR_USER_ID"
-    git clone https://github.com/phyloviz/phyloDB.git phyloDB.git
-    cd phyloDB.git/
-    sed 's|#spring.data.neo4j.uri=bolt://phylodb-neo4j:7687|spring.data.neo4j.uri=bolt://phylodb-neo4j:7687|g' -i phylodb/bin/main/application.properties
-    sed 's|spring.data.neo4j.uri=bolt://localhost:7687|#spring.data.neo4j.uri=bolt://localhost:7687|g' -i phylodb/bin/main/application.properties
-    ./configure.sh
-    cd docker
-    ./build-docker.sh
-    ./start-docker.sh
-    cd ../scripts/example
-    echo y | ./example.sh
+   export TOKEN="YOUR_TOKEN"
+   export USER_ID="YOUR_USER_ID"
+   git clone https://github.com/phyloviz/phyloDB.git phyloDB.git
+   cd phyloDB.git/
+   sed 's|#spring.data.neo4j.uri=bolt://phylodb-neo4j:7687|spring.data.neo4j.uri=bolt://phylodb-neo4j:7687|g' -i phylodb/bin/main/application.properties
+   sed 's|spring.data.neo4j.uri=bolt://localhost:7687|#spring.data.neo4j.uri=bolt://localhost:7687|g' -i phylodb/bin/main/application.properties
+   ./configure.sh
+   cd docker
+   ./build-docker.sh
+   ./start-docker.sh
+   cd ../scripts/example
+   echo y | ./example.sh
 
 To generate `YOUR_TOKEN`, access <https://developers.google.com/oauthplayground/>, sign in, and click 'Authorize
 APIs' with the custom scope `https://www.googleapis.com/auth/userinfo.email`.

diff --git a/phylodb/build.gradle b/phylodb/build.gradle
@@ -32,8 +32,3 @@ dependencies {
 test {
 	useJUnitPlatform()
 }
-
-bootRun {
-	jvmArgs = ['--add-opens=java.base/java.lang=ALL-UNNAMED']
-}
-
diff --git a/phylodb/src/main/java/pt/ist/meic/phylodb/utils/db/Query.java b/phylodb/src/main/java/pt/ist/meic/phylodb/utils/db/Query.java
@@ -68,23 +68,18 @@ public String getExpression() {
 		StringBuilder parameterized = new StringBuilder(parts[0]);
 		for (int i = 1; i < parts.length; i++)
 			parameterized.append(PLACEHOLDER).append(i).append(parts[i]);
-		System.out.println("=====================================");
-		System.out.println("Query:" + parameterized.toString() + ";");
 		return parameterized.toString() + ";";
 	}
 
 	/**
-	 * A map of ids and parameter which indicates to which query parameter, a
-	 * parameter belongs to
+	 * A map of ids and parameter which indicates to which query parameter, a parameter belongs to
 	 *
 	 * @return map of parameters
 	 */
 	public Map<String, Object> getParameters() {
 		Map<String, Object> params = new HashMap<>();
-		for (int i = 0; i < parameters.size(); i++) {
+		for (int i = 0; i < parameters.size(); i++)
 			params.put(String.valueOf(i + 1), parameters.get(i));
-			System.out.println("Parameters: " + String.valueOf(i + 1) + " -> " + parameters.get(i));
-		}
 		return params;
 	}