From b4ccc18ec4d5141555c679a69a3a67a09ba9d691 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philipp=20M=C3=BCnch?= Date: Thu, 9 Jun 2022 20:58:54 +0000 Subject: [PATCH] provide versions --- versions.txt | 383 +++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 383 insertions(+) create mode 100644 versions.txt diff --git a/versions.txt b/versions.txt new file mode 100644 index 0000000..0a833a6 --- /dev/null +++ b/versions.txt @@ -0,0 +1,383 @@ +# packages in environment at /home/pmuench/anaconda3/envs/ommpipeline: +# +# Name Version Build Channel +_libgcc_mutex 0.1 conda_forge conda-forge +_openmp_mutex 4.5 1_gnu conda-forge +_r-mutex 1.0.1 anacondar_1 conda-forge +_sysroot_linux-64_curr_repodata_hack 3 ha9d2b57_10 conda-forge +aioeasywebdav 2.4.0 py37h89c1867_1001 conda-forge +aiohttp 3.7.4 py37h5e8e339_0 conda-forge +alsa-lib 1.2.3 h516909a_0 conda-forge +appdirs 1.4.4 pyh9f0ad1d_0 conda-forge +asteval 0.9.23 pyhd8ed1ab_0 conda-forge +async-timeout 3.0.1 py_1000 conda-forge +attrs 20.3.0 pyhd3deb0d_0 conda-forge +backports 1.0 py_2 conda-forge +backports.functools_lru_cache 1.6.1 py_0 conda-forge +bcbio-gff 0.6.6 pyh864c0ab_1 bioconda +bcftools 1.8 h4da6232_3 bioconda +bcrypt 3.2.0 py37h5e8e339_1 conda-forge +binutils 2.35.1 hdd6e379_2 conda-forge +binutils_impl_linux-64 2.35.1 h193b22a_2 conda-forge +binutils_linux-64 2.35 h67ddf6f_30 conda-forge +biom-format 2.1.10 py37ha21ca33_0 conda-forge +biopython 1.78 py37h5e8e339_2 conda-forge +blast 2.10.1 pl526he19e7b1_3 bioconda +boost 1.70.0 py37h9de70de_1 conda-forge +boost-cpp 1.70.0 h7b93d67_3 conda-forge +boto3 1.17.30 pyhd8ed1ab_0 conda-forge +botocore 1.20.30 pyhd8ed1ab_0 conda-forge +bowtie2 2.4.2 py37h8270d21_1 bioconda +brotlipy 0.7.0 py37h5e8e339_1001 conda-forge +bwa 0.7.17 hed695b0_7 bioconda +bwidget 1.9.14 ha770c72_0 conda-forge +bx-python 0.8.11 py37h73d7ac5_0 bioconda +bzip2 1.0.8 h516909a_3 conda-forge +c-ares 1.17.1 h7f98852_1 conda-forge +ca-certificates 2021.5.30 ha878542_0 conda-forge +cached-property 1.5.2 hd8ed1ab_1 conda-forge +cached_property 1.5.2 pyha770c72_1 conda-forge +cachetools 4.2.1 pyhd8ed1ab_0 conda-forge +cairo 1.16.0 h3fc0475_1005 conda-forge +capnproto 0.6.1 hfc679d8_1 conda-forge +certifi 2021.5.30 py37h89c1867_0 conda-forge +cffi 1.14.4 py37h11fe52a_0 conda-forge +chardet 4.0.0 py37h89c1867_1 conda-forge +circos 0.69.8 0 bioconda +clang_variant 1.0 default conda-forge +clangdev 5.0.0 h79c2894_1009 conda-forge +click 7.1.2 pyh9f0ad1d_0 conda-forge +cmseq 1.0.2 pyh7b7c402_0 bioconda +configargparse 1.4 pyhd8ed1ab_0 conda-forge +cryptography 3.4.6 py37h5d9358c_0 conda-forge +curl 7.71.1 he644dc0_6 conda-forge +cycler 0.10.0 py_2 conda-forge +datrie 0.8.2 py37h8f50634_1 conda-forge +decorator 4.4.2 py_0 conda-forge +deeptools 3.5.0 py_0 bioconda +deeptoolsintervals 0.1.9 py37hf01694f_2 bioconda +dendropy 4.5.2 pyh3252c3a_0 bioconda +diamond 2.0.8 h56fc30b_0 bioconda +docutils 0.16 py37h89c1867_3 conda-forge +dropbox 10.4.1 pyh9f0ad1d_0 conda-forge +eigen 3.3.7 hc9558a2_1001 conda-forge +entrez-direct 13.9 pl526h375a9b1_1 bioconda +enum34 1.1.10 py37hc8dfbb8_2 conda-forge +expat 2.2.10 h9c3ff4c_0 conda-forge +fastani 1.32 he1c1bb9_0 bioconda +fastp 0.20.1 h8b12597_0 bioconda +fasttree 2.1.10 h516909a_4 bioconda +filechunkio 1.8 py_2 conda-forge +fontconfig 2.13.1 hba837de_1004 conda-forge +fortran-compiler 1.1.1 he991be0_0 conda-forge +freetype 2.10.4 h0708190_1 conda-forge +fribidi 1.0.10 h36c2ea0_0 conda-forge +ftputil 5.0.0 pyhd8ed1ab_0 conda-forge +future 0.18.2 py37h89c1867_3 conda-forge +gcc_impl_linux-64 7.5.0 hda68d29_13 conda-forge +gcc_linux-64 7.5.0 h47867f9_30 conda-forge +gettext 0.19.8.1 hf34092f_1004 conda-forge +gfortran_impl_linux-64 7.5.0 h56cb351_18 conda-forge +gfortran_linux-64 7.5.0 h78c8a43_30 conda-forge +ghostscript 9.18 1 bioconda +giflib 5.2.1 h36c2ea0_2 conda-forge +gitdb 4.0.5 pyhd8ed1ab_1 conda-forge +gitpython 3.1.14 pyhd8ed1ab_0 conda-forge +glib 2.66.0 h0dae87d_0 conda-forge +glimmerhmm 3.0.4 pl526hf484d3e_3 bioconda +google-api-core 1.25.1 pyhd8ed1ab_0 conda-forge +google-auth 1.24.0 pyhd3deb0d_0 conda-forge +google-cloud-core 1.5.0 pyhd3deb0d_0 conda-forge +google-cloud-storage 1.31.0 pyh9f0ad1d_0 conda-forge +google-crc32c 1.1.2 py37hab72019_0 conda-forge +google-resumable-media 1.2.0 pyhd3deb0d_0 conda-forge +googleapis-common-protos 1.52.0 py37h89c1867_1 conda-forge +graphite2 1.3.13 h58526e2_1001 conda-forge +graphviz 2.42.3 h0511662_0 conda-forge +grpcio 1.36.1 py37hb27c1af_0 conda-forge +gsl 2.6 he838d99_2 conda-forge +gxx_impl_linux-64 7.5.0 h64c220c_13 conda-forge +gxx_linux-64 7.5.0 h555fc39_30 conda-forge +h5py 3.1.0 nompi_py37h1e651dc_100 conda-forge +harfbuzz 2.7.2 hee91db6_0 conda-forge +hdf5 1.10.6 nompi_h7c3c948_1111 conda-forge +htslib 1.10.2 hd3b49d5_1 bioconda +icu 67.1 he1b5a44_0 conda-forge +idna 2.10 pyh9f0ad1d_0 conda-forge +importlib-metadata 3.7.3 py37h89c1867_0 conda-forge +iqtree 2.0.3 h176a8bc_1 bioconda +irep 1.1.7 pyh24bf2e0_1 bioconda +jinja2 2.11.3 pyh44b312d_0 conda-forge +jmespath 0.10.0 pyh9f0ad1d_0 conda-forge +joblib 1.0.1 pyhd8ed1ab_0 conda-forge +jpeg 9d h36c2ea0_0 conda-forge +jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge +k8 0.2.5 h9a82719_1 bioconda +kernel-headers_linux-64 3.10.0 h77966d4_10 conda-forge +kiwisolver 1.3.1 py37h2527ec5_1 conda-forge +krb5 1.17.2 h926e7f8_0 conda-forge +lcms2 2.12 hddcbb42_0 conda-forge +ld_impl_linux-64 2.35.1 hea4e1c9_2 conda-forge +libblas 3.9.0 8_openblas conda-forge +libcblas 3.9.0 8_openblas conda-forge +libcrc32c 1.1.1 h9c3ff4c_2 conda-forge +libcurl 7.71.1 hcdd3856_6 conda-forge +libdeflate 1.6 h516909a_0 conda-forge +libedit 3.1.20191231 he28a2e2_2 conda-forge +libev 4.33 h516909a_1 conda-forge +libffi 3.2.1 he1b5a44_1007 conda-forge +libgcc 7.2.0 h69d50b8_2 conda-forge +libgcc-ng 9.3.0 h2828fa1_18 conda-forge +libgd 2.2.5 h6e6070c_1008 conda-forge +libgfortran-ng 7.5.0 h14aa051_18 conda-forge +libgfortran4 7.5.0 h14aa051_18 conda-forge +libgomp 9.3.0 h2828fa1_18 conda-forge +libiconv 1.16 h516909a_0 conda-forge +liblapack 3.9.0 8_openblas conda-forge +libnghttp2 1.43.0 h812cca2_0 conda-forge +libopenblas 0.3.12 pthreads_hb3c22a3_1 conda-forge +libpng 1.6.37 h21135ba_2 conda-forge +libprotobuf 3.15.6 h780b84a_0 conda-forge +libsodium 1.0.18 h36c2ea0_1 conda-forge +libssh2 1.9.0 ha56f1ee_6 conda-forge +libstdcxx-ng 9.3.0 h6de172a_18 conda-forge +libtiff 4.2.0 hdc55705_0 conda-forge +libtool 2.4.6 h58526e2_1007 conda-forge +libuuid 2.32.1 h7f98852_1000 conda-forge +libwebp 1.2.0 h3452ae3_0 conda-forge +libwebp-base 1.2.0 h7f98852_2 conda-forge +libxcb 1.13 h7f98852_1003 conda-forge +libxml2 2.9.10 h68273f3_2 conda-forge +libxslt 1.1.33 hf705e74_1 conda-forge +lmfit 1.0.2 pyhd8ed1ab_0 conda-forge +lofreq 2.1.5 py37hdcd9b1b_3 bioconda +lz4-c 1.9.3 h9c3ff4c_0 conda-forge +lzo 2.10 h516909a_1000 conda-forge +mafft 7.475 h516909a_0 bioconda +make 4.3 hd18ef5c_1 conda-forge +markupsafe 1.1.1 py37h5e8e339_3 conda-forge +mash 2.3 ha61e061_0 bioconda +matplotlib 3.3.2 0 conda-forge +matplotlib-base 3.3.2 py37hc9afd2a_1 conda-forge +megahit 1.2.9 h8b12597_0 bioconda +meme 4.11.2 py37pl526h664da7e_6 bioconda +metaphlan 3.0.7 pyh7b7c402_1 bioconda +minimap2 2.17 hed695b0_3 bioconda +multidict 5.1.0 py37h5e8e339_1 conda-forge +muscle 3.8.1551 hc9558a2_5 bioconda +ncbi-genome-download 0.3.0 pyh864c0ab_1 bioconda +ncurses 6.2 h58526e2_4 conda-forge +networkx 2.5 py_0 conda-forge +numpy 1.20.1 py37haa41c4c_0 conda-forge +olefile 0.46 pyh9f0ad1d_1 conda-forge +openjdk 11.0.8 hacce0ff_0 conda-forge +openmp 5.0.0 0 conda-forge +openssl 1.1.1k h7f98852_0 conda-forge +pandas 1.2.3 py37hdc94413_0 conda-forge +pango 1.42.4 h7062337_4 conda-forge +paramiko 2.7.2 pyh9f0ad1d_0 conda-forge +patsy 0.5.1 py_0 conda-forge +pcre 8.44 he1b5a44_0 conda-forge +pcre2 10.35 h2f06484_0 conda-forge +perl 5.26.2 h36c2ea0_1008 conda-forge +perl-app-cpanminus 1.7044 pl526_1 bioconda +perl-archive-tar 2.32 pl526_0 bioconda +perl-autoloader 5.74 pl526_2 bioconda +perl-base 2.23 pl526_1 bioconda +perl-business-isbn 3.004 pl526_0 bioconda +perl-business-isbn-data 20140910.003 pl526_0 bioconda +perl-carp 1.38 pl526_3 bioconda +perl-cgi 4.44 pl526h14c3975_1 bioconda +perl-clone 0.42 pl526h516909a_0 bioconda +perl-common-sense 3.74 pl526_2 bioconda +perl-compress-raw-bzip2 2.087 pl526he1b5a44_0 bioconda +perl-compress-raw-zlib 2.087 pl526hc9558a2_0 bioconda +perl-config-general 2.63 pl526_0 bioconda +perl-constant 1.33 pl526_1 bioconda +perl-data-dumper 2.173 pl526_0 bioconda +perl-digest-hmac 1.03 pl526_3 bioconda +perl-digest-md5 2.55 pl526_0 bioconda +perl-digest-perl-md5 1.9 pl526_1 bioconda +perl-dynaloader 1.25 pl526_1 bioconda +perl-encode 2.88 pl526_1 bioconda +perl-encode-locale 1.05 pl526_6 bioconda +perl-exporter 5.72 pl526_1 bioconda +perl-exporter-tiny 1.002001 pl526_0 bioconda +perl-extutils-makemaker 7.36 pl526_1 bioconda +perl-file-listing 6.04 pl526_1 bioconda +perl-file-path 2.16 pl526_0 bioconda +perl-file-temp 0.2304 pl526_2 bioconda 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+r-cluster 2.0.8 r36ha65eedd_0 r +r-codetools 0.2_16 r36h6115d3f_0 r +r-foreign 0.8_71 r36h96ca727_0 r +r-kernsmooth 2.23_15 r36ha65eedd_4 r +r-lattice 0.20_38 r36h96ca727_0 r +r-mass 7.3_51.3 r36h96ca727_0 r +r-matrix 1.2_17 r36h96ca727_0 r +r-mgcv 1.8_28 r36h96ca727_0 r +r-nlme 3.1_139 r36ha65eedd_0 r +r-nnet 7.3_12 r36h96ca727_0 r +r-recommended 3.6.0 r36_0 r +r-rpart 4.1_15 r36h96ca727_0 r +r-spatial 7.3_11 r36h96ca727_4 r +r-survival 2.44_1.1 r36h96ca727_0 r +ratelimiter 1.2.0 py_1002 conda-forge +raxml 8.2.12 h516909a_2 bioconda +readline 8.0 he28a2e2_2 conda-forge +requests 2.25.1 pyhd3deb0d_0 conda-forge +retrying 1.3.3 py_2 conda-forge +rsa 4.7.2 pyh44b312d_0 conda-forge +s3transfer 0.3.4 pyhd8ed1ab_0 conda-forge +samtools 1.10 h2e538c0_3 bioconda +scipy 1.5.3 py37h8911b10_0 conda-forge +seaborn 0.11.1 hd8ed1ab_1 conda-forge +seaborn-base 0.11.1 pyhd8ed1ab_1 conda-forge +sed 4.8 he412f7d_0 conda-forge +seqkit 0.15.0 0 bioconda +seqtk 1.3 h5bf99c6_3 bioconda +setuptools 49.6.0 py37h89c1867_3 conda-forge +simplejson 3.17.2 py37h5e8e339_2 conda-forge +six 1.15.0 pyh9f0ad1d_0 conda-forge +smmap 3.0.5 pyh44b312d_0 conda-forge +snakemake 5.5.4 1 bioconda +snakemake-minimal 5.5.4 py_2 bioconda +spades 3.15.2 h633aebb_0 bioconda +sqlite 3.34.0 h74cdb3f_0 conda-forge +statsmodels 0.12.2 py37h902c9e0_0 conda-forge +sysroot_linux-64 2.17 h77966d4_10 conda-forge +tbb 2021.1.1 h4bd325d_1 conda-forge +tk 8.6.10 h21135ba_1 conda-forge +tktable 2.10 hb7b940f_3 conda-forge +tornado 6.1 py37h5e8e339_1 conda-forge +trimal 1.4.1 hc9558a2_4 bioconda +typing-extensions 3.7.4.3 0 conda-forge +typing_extensions 3.7.4.3 py_0 conda-forge +uncertainties 3.1.5 pyhd8ed1ab_0 conda-forge +urllib3 1.26.4 pyhd8ed1ab_0 conda-forge +wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge +wheel 0.36.2 pyhd3deb0d_0 conda-forge +wrapt 1.12.1 py37h5e8e339_3 conda-forge +xmlrunner 1.7.7 py_0 conda-forge +xorg-fixesproto 5.0 h14c3975_1002 conda-forge +xorg-inputproto 2.3.2 h7f98852_1002 conda-forge +xorg-kbproto 1.0.7 h7f98852_1002 conda-forge +xorg-libice 1.0.10 h7f98852_0 conda-forge +xorg-libsm 1.2.3 hd9c2040_1000 conda-forge +xorg-libx11 1.6.12 h516909a_0 conda-forge +xorg-libxau 1.0.9 h7f98852_0 conda-forge +xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge +xorg-libxext 1.3.4 h516909a_0 conda-forge +xorg-libxfixes 5.0.3 h516909a_1004 conda-forge +xorg-libxi 1.7.10 h516909a_0 conda-forge +xorg-libxpm 3.5.13 h516909a_0 conda-forge +xorg-libxrender 0.9.10 h516909a_1002 conda-forge +xorg-libxt 1.1.5 h516909a_1003 conda-forge +xorg-libxtst 1.2.3 h516909a_1002 conda-forge +xorg-recordproto 1.14.2 h516909a_1002 conda-forge +xorg-renderproto 0.11.1 h7f98852_1002 conda-forge +xorg-xextproto 7.3.0 h7f98852_1002 conda-forge +xorg-xproto 7.0.31 h7f98852_1007 conda-forge +xz 5.2.5 h516909a_1 conda-forge +yaml 0.2.5 h516909a_0 conda-forge +yarl 1.6.3 py37h5e8e339_1 conda-forge +zipp 3.4.1 pyhd8ed1ab_0 conda-forge +zlib 1.2.11 h516909a_1010 conda-forge +zstd 1.4.9 ha95c52a_0 conda-forge \ No newline at end of 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