diff --git a/README.md b/README.md index d814bcd..3e4ca98 100644 --- a/README.md +++ b/README.md @@ -7,8 +7,10 @@ [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/geofetch/README.html) + **geofetch** is a command-line tool that downloads sequencing data and metadata from GEO and SRA and create metadata tables in [standard PEP format](https://pep.databio.org/). `geofetch` is hosted at [pypi](https://pypi.org/project/geofetch/). You can convert the result of geofetch into unmapped `bam` or `fastq` files with the included `sraconvert` command. + ## Key geofetch features: - Works with GEO and SRA metadata @@ -20,6 +22,7 @@ - Can search GEO to find relevant data - Can be used either as a command-line tool or from within Python using an API + ## Docs --- @@ -60,4 +63,4 @@ https://doi.org/10.1093/bioinformatics/btad069 url = {https://doi.org/10.1093/bioinformatics/btad069}, eprint = {https://academic.oup.com/bioinformatics/article-pdf/39/3/btad069/49407404/btad069.pdf}, } -``` \ No newline at end of file +```