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CMakeLists.txt
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CMakeLists.txt
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# Copyright (C) 2023 Roberto Rossini <roberros@uio.no>
#
# SPDX-License-Identifier: MIT
cmake_minimum_required(VERSION 3.25)
cmake_policy(VERSION 3.25...3.30)
set(CMAKE_POLICY_DEFAULT_CMP0069 NEW)
set(CMAKE_POLICY_DEFAULT_CMP0077 NEW)
list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules/")
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_C_STANDARD 11)
set(CMAKE_CXX_EXTENSIONS OFF)
project(
hictkpy
LANGUAGES
C
CXX
HOMEPAGE_URL https://github.com/paulsengroup/hictkpy
DESCRIPTION "Python bindings for hictk."
)
include(FetchContent)
FetchContent_Declare(
_hictkpy_project_options
URL
"${CMAKE_CURRENT_SOURCE_DIR}/external/project_options-v0.36.6.tar.xz"
URL_HASH SHA256=b4df2a4107847248d4711ee48477cdf93c1a1c7d51a931937759eb9ffba67af8
EXCLUDE_FROM_ALL
SYSTEM
)
FetchContent_Declare(
hictk
URL
"${CMAKE_CURRENT_SOURCE_DIR}/external/hictk-v2.0.1.tar.xz"
URL_HASH "SHA256=9282f7f4e978c71970f07627b360c3a4cf2bce4670ce3bd12e040c51c691ec3c"
EXCLUDE_FROM_ALL
OVERRIDE_FIND_PACKAGE
SYSTEM
)
FetchContent_Declare(
nanobind
URL
"${CMAKE_CURRENT_SOURCE_DIR}/external/nanobind-v2.2.0.tar.xz"
URL_HASH "SHA256=6f0064c5e94b0bc34637644ddf035cdc7831135949b843adf52bc4bdbe2c6b5d"
EXCLUDE_FROM_ALL
OVERRIDE_FIND_PACKAGE
SYSTEM
)
# Tweak hictk
set(HICTK_BUILD_BENCHMARKS OFF)
set(HICTK_BUILD_EXAMPLES OFF)
set(HICTK_BUILD_TOOLS OFF)
set(HICTK_ENABLE_FUZZY_TESTING OFF)
set(HICTK_ENABLE_TESTING OFF)
set(HICTK_INSTALL OFF)
set(HICTK_WITH_EIGEN ON)
set(HICTK_ENABLE_GIT_VERSION_TRACKING OFF)
# We are finding hictk here to avoid name collisions with the ENABLE_* variables defined in the coming lines
find_package(hictk REQUIRED)
get_property(BUILDING_MULTI_CONFIG GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
if(BUILDING_MULTI_CONFIG)
if(NOT CMAKE_BUILD_TYPE)
# Make sure that all supported configuration types have their associated conan packages available. You can reduce
# this list to only the configuration types you use, but only if one is not forced-set on the command line for VS
message(TRACE "Setting up multi-config build types")
set(
CMAKE_CONFIGURATION_TYPES
Debug
Release
RelWithDebInfo
CACHE STRING
"Enabled build types"
FORCE
)
else()
message(TRACE "User chose a specific build type, so we are using that")
set(CMAKE_CONFIGURATION_TYPES ${CMAKE_BUILD_TYPE} CACHE STRING "Enabled build types" FORCE)
endif()
endif()
FetchContent_MakeAvailable(_hictkpy_project_options)
include("${_hictkpy_project_options_SOURCE_DIR}/src/DynamicProjectOptions.cmake")
include("${CMAKE_CURRENT_SOURCE_DIR}/cmake/CompilerWarnings.cmake")
set(ENABLE_CACHE_DEFAULT ON)
set(ENABLE_COMPILE_COMMANDS_SYMLINK_DEFAULT OFF)
set(ENABLE_CONAN_DEFAULT OFF)
set(ENABLE_CPPCHECK_DEFAULT OFF)
set(ENABLE_DOXYGEN_DEFAULT OFF)
set(ENABLE_INTERPROCEDURAL_OPTIMIZATION_DEFAULT ON)
set(ENABLE_NATIVE_OPTIMIZATION_DEFAULT OFF)
set(ENABLE_PCH_DEFAULT OFF)
set(ENABLE_SANITIZER_ADDRESS_DEFAULT OFF)
set(ENABLE_SANITIZER_LEAK_DEFAULT OFF)
set(ENABLE_SANITIZER_POINTER_COMPARE_DEFAULT OFF)
set(ENABLE_SANITIZER_POINTER_SUBTRACT_DEFAULT OFF)
set(ENABLE_SANITIZER_UNDEFINED_DEFAULT OFF)
dynamic_project_options(
PREFIX
hictkpy
# CLANG_WARNINGS # Override the defaults for the CLANG warnings GCC_WARNINGS # Override the defaults for the GCC
CPPCHECK_OPTIONS
--enable=performance,portability,style,warning
--inline-suppr
# We cannot act on a bug/missing feature of cppcheck
--suppress=internalAstError
# if a file does not have an internalAstError, we get an unmatchedSuppression error
--suppress=unmatchedSuppression
--suppress=passedByValue
--inconclusive
MSVC_WARNINGS
"${MSVC_WARNINGS}"
CLANG_WARNINGS
"${CLANG_WARNINGS}"
GCC_WARNINGS
"${GCC_WARNINGS}"
CUDA_WARNINGS
"${CUDA_WARNINGS}"
)
target_compile_features(hictkpy_project_options INTERFACE "cxx_std_${CMAKE_CXX_STANDARD}")
# Tweak fmt
target_compile_definitions(
hictkpy_project_options
INTERFACE
FMT_HEADER_ONLY
FMT_ENFORCE_COMPILE_STRING
)
# Tweak spdlog
target_compile_definitions(hictkpy_project_options INTERFACE SPDLOG_FMT_EXTERNAL)
# Tweak hictk
target_compile_definitions(
hictkpy_project_options
INTERFACE
HICTK_WITH_ARROW
HICTK_WITH_EIGEN
)
if(WIN32)
target_compile_definitions(
hictkpy_project_options
INTERFACE
NOMINMAX
_CRT_SECURE_NO_WARNINGS
_DISABLE_CONSTEXPR_MUTEX_CONSTRUCTOR # https://github.com/gabime/spdlog/issues/3212
)
endif()
add_subdirectory(src)