Code

Implement ICE balancing#11

Code

Merged

robomics merged 34 commits intomainpaulsengroup/hictk:mainfrom balancingpaulsengroup/hictk:balancingCopy head branch name to clipboardSep 28, 2023

+2,735-93

Commits

Commits on Sep 18, 2023

• Initial implementation of VC balancing

  robomics

  committed
  81f5123

• Initial implementation of ICE balancing

  robomics

  committed
  7e3fc1d

Commits on Sep 19, 2023

• Properly implement ICE cis balancing

  robomics

  committed
  fc703a1

• Properly implement ICE trans balancing. Add tests

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  committed
  abbffe3

Commits on Sep 20, 2023

• Perf optimizations

  Show description for d520b14
  robomics

  committed
  d520b14

• Refactor

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  committed
  7d94262

Commits on Sep 22, 2023

• Implement chunked ICE balancing

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  committed
  4463608

• Bugfix

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  committed
  d39230c

• Bugfix

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  committed
  5c7840c

Commits on Sep 23, 2023

• Bugfix

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  committed
  de16e6c

Commits on Sep 24, 2023

• Bugfix

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  60a50f7

• Add more tests

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  a138acd

• Bugfix

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  4a624fe

• Improve logging

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  071d9d9

• Update serde code to use zstd contexts

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  6660df4

• Refactor tests

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  committed
  f004eb9

• Bugfix

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  committed
  d9514c3

Commits on Sep 26, 2023

• Implement parallel ICE balancing

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  committed
  c2aac06

Commits on Sep 27, 2023

• Merge branch 'main' into balancing

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  committed
  cffaf9e

• Initial implementation of hictk balance

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  committed
  d7a9053

• Bugfix

  robomics

  committed
  a48e37a

• Add integration tests for hictk balance

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  committed
  c55ba81

• Update .clang-tidy

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  committed
  a61d309

• Fix typos

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  committed
  12ab184

Commits on Sep 28, 2023

• Fix macos builds

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  committed
  114a7be

• Fix windows builds

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  committed
  c35c9a8

• Fix integration tests on macOS

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  committed
  6a9f050

• Bugfix

  robomics

  committed
  13e01af

• Update test dataset

  robomics

  committed
  35ab0e2

• Fix macos builds

  robomics

  committed
  094582a

• Fix macos tests

  robomics

  committed
  b7180f3

• Fix ubuntu builds

  robomics

  committed
  3399bb4

• Bugfix

  robomics

  committed
  a12a1d6

• Fix ubuntu builds

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  committed
  3b694cb