Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement ICE balancing #11

Merged
merged 34 commits into from
Sep 28, 2023
Merged

Implement ICE balancing #11

merged 34 commits into from
Sep 28, 2023

Conversation

robomics
Copy link
Contributor

@robomics robomics commented Jul 2, 2023

No description provided.

@robomics robomics changed the title Initial implementation of simple balancing algorithms Implement ICE balancing Sep 24, 2023
@codecov
Copy link

codecov bot commented Sep 24, 2023

Codecov Report

Merging #11 (3b694cb) into main (cac5aa5) will increase coverage by 1.03%.
Report is 6 commits behind head on main.
The diff coverage is 90.13%.

@@            Coverage Diff             @@
##             main      #11      +/-   ##
==========================================
+ Coverage   82.56%   83.60%   +1.03%     
==========================================
  Files          81       87       +6     
  Lines        5674     6561     +887     
==========================================
+ Hits         4685     5485     +800     
- Misses        989     1076      +87     
Files Coverage Δ
src/hictk/cli/cli_convert.cpp 80.61% <100.00%> (ø)
src/hictk/convert/cool_to_hic.cpp 55.43% <100.00%> (-3.48%) ⬇️
src/hictk/include/hictk/tools/cli.hpp 54.16% <ø> (ø)
src/hictk/main.cpp 64.47% <100.00%> (+0.96%) ⬆️
...alancing/include/hictk/balancing/sparse_matrix.hpp 100.00% <100.00%> (ø)
...tk/bin_table/include/hictk/impl/bin_table_impl.hpp 92.37% <100.00%> (+0.88%) ⬆️
...rc/libhictk/cooler/include/hictk/cooler/cooler.hpp 100.00% <100.00%> (ø)
...ooler/include/hictk/cooler/impl/file_read_impl.hpp 73.80% <100.00%> (-0.18%) ⬇️
.../include/hictk/cooler/impl/file_accessors_impl.hpp 87.34% <83.33%> (-0.33%) ⬇️
src/libhictk/file/include/hictk/impl/file_impl.hpp 99.00% <0.00%> (-1.00%) ⬇️
... and 8 more

... and 5 files with indirect coverage changes

@robomics robomics force-pushed the balancing branch 2 times, most recently from d8ad3df to 0980c64 Compare September 28, 2023 09:36
@robomics robomics merged commit b839765 into main Sep 28, 2023
51 checks passed
@robomics robomics deleted the balancing branch September 28, 2023 20:23
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant