Add native support to write .hic files #102
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robomics
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Jan 16, 2024
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robomics
commented
- Implement write operations on .hic files
- Implement zoomify operations on .hic files
- Implement balancing operations on .hic files
- Update hictk CLI tools to take advantage of the newly developed features
- Drop dependency on HiCTools/JuicerTools and the JVM
This class splits a stream of pixels into chunks, keeping track of which chunks map to which blocks in the matrix-matrix grid. After calling finalize() on an HiCBlockPartitioner object, the class can be used to merge chunks mapping to the same matrix-matrix block. The functionality provided by this class is meant to be used to preprocess a stream of pixels to aid the incremental creation of .hic files.
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