From d7c3b157964199d5b4861b97bfb40a9750b40867 Mon Sep 17 00:00:00 2001
From: Roberto Rossini <71787608+robomics@users.noreply.github.com>
Date: Thu, 14 Dec 2023 20:53:08 +0100
Subject: [PATCH] Bugfix

---
 .clang-tidy                                        | 2 ++
 benchmark/fetch_and_sum/fetch_and_sum.cpp          | 2 +-
 src/hictk/balance/balance.cpp                      | 2 +-
 src/hictk/dump/dump_common.cpp                     | 1 +
 src/hictk/include/hictk/tools/cli.hpp              | 1 +
 src/hictk/validate/validate.cpp                    | 1 +
 src/libhictk/file/include/hictk/impl/file_impl.hpp | 2 +-
 7 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/.clang-tidy b/.clang-tidy
index 016e969d..b084bf21 100644
--- a/.clang-tidy
+++ b/.clang-tidy
@@ -30,3 +30,5 @@ CheckOptions:
     value: '1'
   - key: cppcoreguidelines-macro-usage.AllowedRegexp
     value: 'DISABLE_WARNING_.*'
+  - key: misc-include-cleaner.IgnoreHeaders
+    value: 'fmt/.*'
diff --git a/benchmark/fetch_and_sum/fetch_and_sum.cpp b/benchmark/fetch_and_sum/fetch_and_sum.cpp
index 021a12f0..904db298 100644
--- a/benchmark/fetch_and_sum/fetch_and_sum.cpp
+++ b/benchmark/fetch_and_sum/fetch_and_sum.cpp
@@ -9,7 +9,7 @@
 #include <chrono>
 #include <hictk/cooler.hpp>
 #include <hictk/hic.hpp>
-#include <hictk/hic/utils.hpp>
+#include <hictk/hic/validation.hpp>
 #include <string_view>
 #include <variant>
 
diff --git a/src/hictk/balance/balance.cpp b/src/hictk/balance/balance.cpp
index 77babd87..1dd0a614 100644
--- a/src/hictk/balance/balance.cpp
+++ b/src/hictk/balance/balance.cpp
@@ -29,9 +29,9 @@
 #include "hictk/cooler/group.hpp"
 #include "hictk/cooler/multires_cooler.hpp"
 #include "hictk/cooler/uri.hpp"
-#include "hictk/cooler/utils.hpp"
 #include "hictk/file.hpp"
 #include "hictk/hic.hpp"
+#include "hictk/hic/utils.hpp"
 #include "hictk/hic/validation.hpp"
 #include "hictk/tools/config.hpp"
 #include "hictk/tools/juicer_tools.hpp"
diff --git a/src/hictk/dump/dump_common.cpp b/src/hictk/dump/dump_common.cpp
index bafa1f30..d1e67662 100644
--- a/src/hictk/dump/dump_common.cpp
+++ b/src/hictk/dump/dump_common.cpp
@@ -16,6 +16,7 @@
 #include "hictk/cooler.hpp"
 #include "hictk/file.hpp"
 #include "hictk/hic.hpp"
+#include "hictk/hic/utils.hpp"
 #include "hictk/pixel.hpp"
 
 namespace hictk::tools {
diff --git a/src/hictk/include/hictk/tools/cli.hpp b/src/hictk/include/hictk/tools/cli.hpp
index 88a0968a..3c11ac0a 100644
--- a/src/hictk/include/hictk/tools/cli.hpp
+++ b/src/hictk/include/hictk/tools/cli.hpp
@@ -17,6 +17,7 @@
 #include "config.hpp"
 #include "hictk/cooler.hpp"
 #include "hictk/cooler/validation.hpp"
+#include "hictk/hic/utils.hpp"
 #include "hictk/hic/validation.hpp"
 #include "hictk/string_utils.hpp"
 
diff --git a/src/hictk/validate/validate.cpp b/src/hictk/validate/validate.cpp
index 46b3b123..0ef82732 100644
--- a/src/hictk/validate/validate.cpp
+++ b/src/hictk/validate/validate.cpp
@@ -19,6 +19,7 @@
 #include "hictk/cooler/singlecell_cooler.hpp"
 #include "hictk/cooler/validation.hpp"
 #include "hictk/hic.hpp"
+#include "hictk/hic/utils.hpp"
 #include "hictk/hic/validation.hpp"
 #include "hictk/tools/config.hpp"
 
diff --git a/src/libhictk/file/include/hictk/impl/file_impl.hpp b/src/libhictk/file/include/hictk/impl/file_impl.hpp
index b5375ac0..b43880c0 100644
--- a/src/libhictk/file/include/hictk/impl/file_impl.hpp
+++ b/src/libhictk/file/include/hictk/impl/file_impl.hpp
@@ -25,7 +25,7 @@
 #include "hictk/cooler/validation.hpp"
 #include "hictk/hic.hpp"
 #include "hictk/hic/pixel_selector.hpp"
-#include "hictk/hic/utils.hpp"
+#include "hictk/hic/validation.hpp"
 #include "hictk/pixel.hpp"
 #include "hictk/reference.hpp"