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Bugfix
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robomics committed Jan 22, 2024
1 parent b2e56bb commit b3de553
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2 changes: 2 additions & 0 deletions src/hictk/cli/cli_fix_mcool.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -143,6 +143,8 @@ void Cli::validate_fix_mcool_subcommand() const {
void Cli::transform_args_fix_mcool_subcommand() {
auto& c = std::get<FixMcoolConfig>(_config);

c.tmp_dir /= (c.path_to_input.filename().string() + ".tmp");

// in spdlog, high numbers correspond to low log levels
assert(c.verbosity > 0 && c.verbosity < 5);
c.verbosity = static_cast<std::uint8_t>(spdlog::level::critical) - c.verbosity;
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