Honor --tmp-dir when converting .[m]cool to .hic

paulsengroup · Oct 9, 2023 · ab62e38 · ab62e38
1 parent 6b3e618
commit ab62e38
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/hictk/convert/cool_to_hic.cpp b/src/hictk/convert/cool_to_hic.cpp
@@ -288,7 +288,7 @@ static bool dump_weights(const ConvertConfig& c, const std::filesystem::path& we
 void cool_to_hic(const ConvertConfig& c) {
   std::ignore = find_java();
 
-  static const internal::TmpDir tmpdir{};
+  const internal::TmpDir tmpdir{c.tmp_dir / c.path_to_output.filename()};
 
   const auto chrom_sizes = tmpdir() / "reference.chrom.sizes";
   const auto pixels = [&]() {