Refactor hictk dump to better support --cis/trans-only options

paulsengroup · Dec 4, 2023 · 7234995 · 7234995
1 parent 08c9e5c
commit 7234995
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Showing 6 changed files with 334 additions and 316 deletions.
diff --git a/src/hictk/CMakeLists.txt b/src/hictk/CMakeLists.txt
@@ -29,6 +29,9 @@ target_sources(
           ${CMAKE_CURRENT_SOURCE_DIR}/convert/cool_to_hic.cpp
           ${CMAKE_CURRENT_SOURCE_DIR}/convert/hic_to_cool.cpp
           ${CMAKE_CURRENT_SOURCE_DIR}/dump/dump.cpp
+          ${CMAKE_CURRENT_SOURCE_DIR}/dump/dump_common.cpp
+          ${CMAKE_CURRENT_SOURCE_DIR}/dump/dump_multiple.cpp
+          ${CMAKE_CURRENT_SOURCE_DIR}/dump/dump_single.cpp
           ${CMAKE_CURRENT_SOURCE_DIR}/fix_mcool/fix_mcool.cpp
           ${CMAKE_CURRENT_SOURCE_DIR}/load/load.cpp
           ${CMAKE_CURRENT_SOURCE_DIR}/merge/merge.cpp