From 0ec9edcaad19b71d06fbbfb100b9366ce088530f Mon Sep 17 00:00:00 2001
From: Roberto Rossini <71787608+robomics@users.noreply.github.com>
Date: Sat, 30 Sep 2023 18:12:07 +0200
Subject: [PATCH] Fix fuzzy testing (#70)

---
 .github/workflows/fuzzy-testing.yml | 40 ++++++++++++++++++++---------
 1 file changed, 28 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/fuzzy-testing.yml b/.github/workflows/fuzzy-testing.yml
index 8cf96885..e29c9cd2 100644
--- a/.github/workflows/fuzzy-testing.yml
+++ b/.github/workflows/fuzzy-testing.yml
@@ -8,29 +8,20 @@ on:
     branches: [ main ]
     paths:
       - ".github/workflows/fuzzy-testing.yml"
-      - "bindings/python/**"
       - "cmake/**"
-      - "examples/**"
       - "src/**"
       - "test/scripts/fuzzy_test.py"
       - "test/scripts/link_h5_dataset.py"
       - "CMakeLists.txt"
       - "conanfile.txt"
-      - "pyproject.toml"
-      - "setup.cfg"
-      - "setup.py"
     tags:
       - 'v*.*.*'
 
   pull_request:
     paths:
       - ".github/workflows/fuzzy-testing.yml"
-      - "bindings/python/**"
       - "test/scripts/fuzzy_test.py"
       - "test/scripts/link_h5_dataset.py"
-      - "pyproject.toml"
-      - "setup.cfg"
-      - "setup.py"
 
   schedule:
     # Run weekly
@@ -112,6 +103,9 @@ jobs:
       CONAN_HOME: '/root/.conan2'
 
     steps:
+      - name: Clone hictk
+        uses: actions/checkout@v4
+
       - name: Clone hictkpy
         uses: actions/checkout@v4
         with:
@@ -127,7 +121,7 @@ jobs:
           sed -i 's|URL_HASH.*|GIT_TAG ${{ github.event.after }}|' CMakeLists.txt
           grep 'GIT_TAG' CMakeLists.txt
 
-      - name: Patch hictkpy
+      - name: Patch hictkpy (schedule)
         working-directory: hictkpy
         if: github.event_name == 'schedule'
         run: |
@@ -166,6 +160,28 @@ jobs:
           conan cache clean "*" --source
           conan remove --confirm "*"
 
+      - name: Install build dependencies
+        run: |
+          conan install .                     \
+          --build=missing                     \
+          -pr:b="$CONAN_DEFAULT_PROFILE_PATH" \
+          -pr:h="$CONAN_DEFAULT_PROFILE_PATH" \
+          -s build_type=Release               \
+          -s compiler.libcxx=libstdc++11      \
+          -s compiler.cppstd=17               \
+          -o '*/*:shared=True'                \
+          --output-folder=build
+
+          conan install hictkpy               \
+          --build=missing                     \
+          -pr:b="$CONAN_DEFAULT_PROFILE_PATH" \
+          -pr:h="$CONAN_DEFAULT_PROFILE_PATH" \
+          -s build_type=Release               \
+          -s compiler.libcxx=libstdc++11      \
+          -s compiler.cppstd=17               \
+          -o '*/*:shared=True'                \
+          --output-folder=build
+
       - name: Clean Conan cache (post-build)
         if: steps.cache-conan.outputs.cache-hit != 'true'
         run: |
@@ -173,14 +189,14 @@ jobs:
           conan cache clean "*" --download
           conan cache clean "*" --source
 
-
       - name: Install Python bindings
         working-directory: hictkpy
         run: |
           pip install --upgrade pip setuptools wheel pybind11
           env CC=clang-15 \
               CXX=clang++-15 \
-              CMAKE_ARGS="-DCMAKE_PREFIX_PATH=$PWD/build" \
+              CMAKE_ARGS="-DCMAKE_PREFIX_PATH=$PWD/../build" \
+              HICTKPY_SETUP_SKIP_CONAN=1 \
           pip install . -v
 
       - name: Save Conan cache