Remove FPs and TNs from returned results

pachterlab · Nov 14, 2023 · 96caf22 · 96caf22
1 parent c49a277
commit 96caf22
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/gget/gget_elm.py b/gget/gget_elm.py
@@ -350,7 +350,10 @@ def elm(
             ortho_df[col] = np.NaN
 
     ortho_df = ortho_df[ortho_cols]
+    # Drop duplicate rows
     ortho_df = ortho_df.drop_duplicates()
+    # Remove false positives and true negatives
+    ortho_df = ortho_df[(ortho_df["InstanceLogic"] != "false positive") & (ortho_df["InstanceLogic"] != "true negative")]
 
     # Build data frame containing regex motif matches
     if verbose:
@@ -418,7 +421,10 @@ def elm(
             df_regex_matches[col] = np.NaN
 
     df_regex_matches = df_regex_matches[regex_cols]
+    # Drop duplicates
     df_regex_matches = df_regex_matches.drop_duplicates()
+    # Remove false positives and true negatives
+    df_regex_matches = df_regex_matches[(df_regex_matches["InstanceLogic"] != "false positive") & (df_regex_matches["InstanceLogic"] != "true negative")]
 
     # Create out folder if it does not exist
     if out: