From 5b6ca05fdf2da995e4842ab1bda8888e4e6c3dd7 Mon Sep 17 00:00:00 2001 From: "Laura Luebbert, Ph.D." <56094636+lauraluebbert@users.noreply.github.com> Date: Tue, 12 Nov 2024 06:35:29 +0100 Subject: [PATCH] Update gget_diamond.py --- gget/gget_diamond.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gget/gget_diamond.py b/gget/gget_diamond.py index 161f2bf2..0ea50bb5 100644 --- a/gget/gget_diamond.py +++ b/gget/gget_diamond.py @@ -41,7 +41,7 @@ def diamond( - query Sequences (str or list) or path to FASTA file containing sequences to be aligned against the reference. - reference Reference sequences (str or list) or path to FASTA file containing reference sequences. Set translated=True if reference sequences are amino acid sequences and query sequences are nucleotide sequences. - - translated True/False whether to perform translated alignment of nucleotide sequences to an amino acid reference. + - translated True/False whether to perform translated alignment of nucleotide sequences to amino acid reference sequences. Default: False. - diamond_db Path to save DIAMOND database created from reference. Default: None -> Temporary db file will be deleted after alignment or saved in 'out' if 'out' is provided.