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Update gget_diamond.py
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lauraluebbert authored Nov 12, 2024
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2 changes: 1 addition & 1 deletion gget/gget_diamond.py
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Expand Up @@ -41,7 +41,7 @@ def diamond(
- query Sequences (str or list) or path to FASTA file containing sequences to be aligned against the reference.
- reference Reference sequences (str or list) or path to FASTA file containing reference sequences.
Set translated=True if reference sequences are amino acid sequences and query sequences are nucleotide sequences.
- translated True/False whether to perform translated alignment of nucleotide sequences to an amino acid reference.
- translated True/False whether to perform translated alignment of nucleotide sequences to amino acid reference sequences.
Default: False.
- diamond_db Path to save DIAMOND database created from reference.
Default: None -> Temporary db file will be deleted after alignment or saved in 'out' if 'out' is provided.
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