Fix bug

pachterlab · Nov 12, 2024 · 1b1a8fc · 1b1a8fc
1 parent 1fe5f5f
commit 1b1a8fc
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/gget/gget_diamond.py b/gget/gget_diamond.py
@@ -122,9 +122,11 @@ def diamond(
         output_w = output.replace("/", "\\")
 
     if translated:
-        diamond_program = "blastp"
-    else:
+        if verbose:
+            logger.info(f"Aligning nucleotide query to amino acid reference (blastx mode).")
         diamond_program = "blastx"
+    else:
+        diamond_program = "blastp"
 
     if platform.system() == "Windows":
         command = f"{DIAMOND} version \