From 1a7b9005cb36ab76933776f46b4bf5ed178ca4e5 Mon Sep 17 00:00:00 2001 From: Shujun Ou Date: Thu, 25 Nov 2021 19:18:43 -0600 Subject: [PATCH] fix typo --- util/gff2bed.pl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/util/gff2bed.pl b/util/gff2bed.pl index e88d5f1..0712dc8 100644 --- a/util/gff2bed.pl +++ b/util/gff2bed.pl @@ -66,7 +66,7 @@ $type = "Crypton" if $sequence_ontology =~ /Crypton_YR_transposon/i; # $type = "Penelope" if $sequence_ontology =~ /Penelope|RPP/i; $type = "repeat_region" if $sequence_ontology =~ /repeat_region|DNA_transposon/i; - $type = "repeat_region" if $sequence_ontology == 'retrotransposon'; + $type = "repeat_region" if $sequence_ontology =~ 'retrotransposon'; $type = 'repeat_region' if $sequence_ontology =~ /Unknown/i; #suggested by Changfu Jia $type = $1 if $sequence_ontology =~ /^(.*)\/.*/ and $1 !~ /DNA|MITE/i;