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fix typo
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oushujun committed Nov 26, 2021
1 parent e65db8a commit 1a7b900
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion util/gff2bed.pl
Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@
$type = "Crypton" if $sequence_ontology =~ /Crypton_YR_transposon/i;
# $type = "Penelope" if $sequence_ontology =~ /Penelope|RPP/i;
$type = "repeat_region" if $sequence_ontology =~ /repeat_region|DNA_transposon/i;
$type = "repeat_region" if $sequence_ontology == 'retrotransposon';
$type = "repeat_region" if $sequence_ontology =~ 'retrotransposon';
$type = 'repeat_region' if $sequence_ontology =~ /Unknown/i; #suggested by Changfu Jia
$type = $1 if $sequence_ontology =~ /^(.*)\/.*/ and $1 !~ /DNA|MITE/i;

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