From f7c68ae7398960b44626aeb7c222f1bec0314b62 Mon Sep 17 00:00:00 2001
From: Kaichi Huang <hkchi@users.noreply.github.com>
Date: Wed, 1 Apr 2020 00:27:54 -0700
Subject: [PATCH] Update EDTA_raw.pl

Small fix to report finishing time for TIR so that users can have run time information.
---
 EDTA_raw.pl | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/EDTA_raw.pl b/EDTA_raw.pl
index 58e827b..9686c61 100755
--- a/EDTA_raw.pl
+++ b/EDTA_raw.pl
@@ -399,9 +399,11 @@
 chdir '../..';
 
 # check results
+$date=`date`;
+chomp ($date);
 die "Error: TIR results not found!\n\n" unless -e "$genome.EDTA.raw/$genome.TIR.raw.fa";
 if (-s "$genome.EDTA.raw/$genome.TIR.raw.fa"){
-	print STDERR "Finish finding TIR candidates.\n\n";
+	print STDERR "$date\tFinish finding TIR candidates.\n\n";
 	} else {
 	`touch "$genome.EDTA.raw/$genome.TIR.raw.fa"`;
 	print STDERR "Warning: The TIR result file has 0 bp!\n\n";