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    9 repositories

    • RiboMiner

      Public
      a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
      co-translationribosome-profiling-dataribosome-stalling-eventsmetagene-analysis
      Python
      •
      GNU General Public License v3.0
      •8•15•0•0•Updated Nov 25, 2024Nov 25, 2024

    • SCASL

      Public
      single-cell clustering based on alternative splicing landscapes
      Python
      •
      Apache License 2.0
      •3•16•7•0•Updated Mar 20, 2024Mar 20, 2024

    • RocA

      Public
      Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A
      ribosome-profilingrocatranslatome
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Dec 28, 2022Dec 28, 2022

    • DeepLinc

      Public
      De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
      Python
      •
      MIT License
      •7•15•5•0•Updated Oct 11, 2022Oct 11, 2022

    • RiboCode

      Public
      release version
      bioinformaticsorfsribosome-profilingpeptides
      Python
      •
      MIT License
      •16•48•33•0•Updated Jul 29, 2022Jul 29, 2022

    • xtail

      Public
      Genome-wide assessment of differential translations with ribosome profiling data
      R
      •
      GNU General Public License v3.0
      •19•19•18•0•Updated Apr 7, 2022Apr 7, 2022

    • cscMap

      Public
      cscMap is a bioinformatics pipeline to search for the RNA chimeras resulted from fusions of the transcripts encoded by the two opposite DNA strands.
      Python
      •3•4•4•0•Updated Jun 23, 2021Jun 23, 2021

    • RPF-count-CDS

      Public
      Counting the RPF reads map to CDS region
      Python
      •
      MIT License
      •3•0•0•0•Updated Feb 17, 2020Feb 17, 2020

    • ORFcalling

      Public
      A tutorial review of some methods for ORF calling
      ribocode
      Python
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated Dec 14, 2017Dec 14, 2017