Repositories list

• CFChemApps

  Public
  Web application for visualizing chemical structures

  Python

  •0•1•2•1•Updated Mar 7, 2025Mar 7, 2025

• cfde-distillery

  Public
  CFDE Data Distillery Partnership Project IDG contributions

  Python

  •

  Creative Commons Zero v1.0 Universal

  •1•0•7•0•Updated Mar 7, 2025Mar 7, 2025

• cfde-biomarkers

  Public
  CFDE biomarkers partnership project, UNM and IDG contributions

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• Badapple2

  Public
  Bioassay data associative promiscuity pattern learning engine V2.

  cheminformatics

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• IDG-CFDE-ETL

  Public
  IDG ETL scripts for CFDE

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• TICTAC

  Public
  Target illumination clinical trials analytics with cheminformatics

  Jupyter Notebook

  •2•2•0•0•Updated Jan 30, 2025Jan 30, 2025

• TIGA

  Public
  An approach, workflow and web app for GWAS gene-trait evidence aggregation

  R

  •

  BSD 2-Clause "Simplified" License

  •1•3•4•0•Updated Jan 15, 2025Jan 15, 2025

• CFDE_IDG_DRS

  Public
  Data Repository Service (DRS) API

  0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• Badapple2-API

  Public
  API for Badapple2

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• Badapple2-UI

  Public
  UI for Badapple2

  TypeScript

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• tinx-api

  Public
  TIN-X API

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•3•1•Updated Nov 20, 2024Nov 20, 2024

• CFChemAPI

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •1•0•1•1•Updated Nov 19, 2024Nov 19, 2024

• tinx-ui

  Public
  TIN-X UI

  JavaScript

  •

  BSD 2-Clause "Simplified" License

  •0•0•2•1•Updated Nov 18, 2024Nov 18, 2024

• EpiLitExtraction-BPV2Dementia

  Public
  Extraction of study data from human observational epidemiological studies investigating blood pressure variability (BPV) and dementia(s)

  MIT License

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• PULSNAR

  Public
  Python

  •

  MIT License

  •1•4•0•0•Updated Jul 29, 2024Jul 29, 2024

• CFChemUI

  Public
  TypeScript

  •

  Creative Commons Zero v1.0 Universal

  •2•0•2•0•Updated Jul 12, 2024Jul 12, 2024

• COMRADEdb

  Public
  LLM-driven information extraction from epidemiologic studies

  R

  •0•0•0•0•Updated May 31, 2024May 31, 2024

• ISBDSCourse_CFDE

  Public
  Independent Study in Biomedical Data Science (ISBDS), Common Fund Data Ecosystem (CFDE) Edition

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Apr 1, 2024Apr 1, 2024

• ISBDSCourse

  Public
  Independent Study in Biomedical Data Science (ISBDS)

  Rich Text Format

  •

  Creative Commons Zero v1.0 Universal

  •1•0•3•0•Updated Feb 22, 2024Feb 22, 2024

• idg-cfde

  Public
  IDG: Common Fund Data Ecosystem (CFDE)

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •2•2•1•0•Updated Jan 9, 2024Jan 9, 2024

• Replicase

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023

• unm_biocomp_util

  Public
  Utility functions: file, math, time, http, threads, db.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•1•Updated Nov 20, 2023Nov 20, 2023

• Badapple

  Public
  Bioassay data associative promiscuity pattern learning engine.

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•1•Updated Nov 20, 2023Nov 20, 2023

• unm_biocomp_hscaf

  Public
  HierS scaffold analysis implementation

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•0•1•Updated Nov 20, 2023Nov 20, 2023

• dementiaConfounders

  Public
  Confounders for dementia subtypes

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 28, 2023Oct 28, 2023

• unm_biocomp

  Public
  Apps, servlets and libs including several TID public web apps

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

• REDIAL_UI

  Public
  PHP

  •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

• redial-deploy

  Public
  Python

  •

  MIT License

  •0•0•1•0•Updated Oct 2, 2023Oct 2, 2023

• DrugRepoDB

  Public
  A Standard Database for Drug Repositioning

  R

  •12•3•0•0•Updated Jun 15, 2023Jun 15, 2023

• BARD_UNM

  Public
  BioAssay Research Database (BARD) project code including Badapple plugin

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•2•Updated Jun 14, 2023Jun 14, 2023