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    218 repositories

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •25•11•2•14•Updated Feb 25, 2025Feb 25, 2025

    • audit-service

      Public
      Python
      •
      Apache License 2.0
      •0•5•0•1•Updated Feb 25, 2025Feb 25, 2025

    • indexd

      Public
      Index service server
      gen3
      Python
      •
      Apache License 2.0
      •20•21•24•19•Updated Feb 25, 2025Feb 25, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •6•2•0•10•Updated Feb 25, 2025Feb 25, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •9•8•0•189•Updated Feb 25, 2025Feb 25, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•182•Updated Feb 25, 2025Feb 25, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•9•Updated Feb 25, 2025Feb 25, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •68•43•99•98•Updated Feb 25, 2025Feb 25, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•4•Updated Feb 24, 2025Feb 24, 2025

    • heal-data-commons

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•4•Updated Feb 24, 2025Feb 24, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •45•29•43•16•Updated Feb 24, 2025Feb 24, 2025

    • gen3-discovery-ai

      Public
      Gen3 Discovery AI
      Python
      •
      Apache License 2.0
      •0•1•0•10•Updated Feb 24, 2025Feb 24, 2025

    • gen3-qa

      Public
      Integration Tests for Gen3
      JavaScript
      •
      Apache License 2.0
      •4•6•2•17•Updated Feb 23, 2025Feb 23, 2025

    • bih_dictionary

      Public
      The data dictionary for the MIDRC BDF Imaging Hub.
      Python
      •
      Apache License 2.0
      •2•1•0•1•Updated Feb 22, 2025Feb 22, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•79•Updated Feb 22, 2025Feb 22, 2025

    • gen3-terraform

      Public
      HCL
      •
      Apache License 2.0
      •0•1•0•6•Updated Feb 21, 2025Feb 21, 2025

    • orthanc-builder

      Public
      Repo used to build osimis/orthanc docker images, windows installers and OSX packages
      Shell
      •
      GNU Affero General Public License v3.0
      •14•0•0•2•Updated Feb 21, 2025Feb 21, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      JavaScript
      •
      Apache License 2.0
      •17•0•0•5•Updated Feb 21, 2025Feb 21, 2025

    • manifestservice

      Public
      create and read manifests from s3
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Feb 21, 2025Feb 21, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •48•38•3•78•Updated Feb 21, 2025Feb 21, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •18•11•22•19•Updated Feb 21, 2025Feb 21, 2025

    • docs-gen3

      Public
      Repository for Public Gen3 Technical Documentation
      HTML
      •
      Apache License 2.0
      •1•1•0•0•Updated Feb 21, 2025Feb 21, 2025

    • peregrine

      Public
      GraphQL search API service
      gen3
      Python
      •
      Apache License 2.0
      •9•12•12•11•Updated Feb 21, 2025Feb 21, 2025

    • workspace-token-service

      Public
      gen3
      Python
      •
      Apache License 2.0
      •3•3•0•3•Updated Feb 21, 2025Feb 21, 2025

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•21•Updated Feb 21, 2025Feb 21, 2025

    • gen3-auspice

      Public
      Web app for visualizing pathogen evolution
      JavaScript
      •
      GNU Affero General Public License v3.0
      •165•0•0•48•Updated Feb 21, 2025Feb 21, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •141•0•0•4•Updated Feb 20, 2025Feb 20, 2025

    • sower-jobs

      Public
      Repos for storing all sower jobs
      Python
      •
      Apache License 2.0
      •0•0•0•5•Updated Feb 20, 2025Feb 20, 2025

    • staging-HEAL-platform-documentation

      Public
      staging and dev area for public documentation for the HEAL platform
      HTML
      •
      Apache License 2.0
      •7•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • gen3.org

      Public
      The website for gen3.org
      gen3
      HTML
      •
      Apache License 2.0
      •12•12•0•12•Updated Feb 20, 2025Feb 20, 2025