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    51 repositories

    • long_context_clues

      Public
      Taking off-the-shelf HuggingFace models and training them on EHR data
      machine-learninghealthcareelectronic-health-recordsfoundation-models
      Jupyter Notebook
      •
      Apache License 2.0
      •4•10•1•1•Updated Feb 11, 2025Feb 11, 2025

    • femr

      Public
      FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records
      healthcareelectronic-health-recordsself-supervised-learningfoundation-models
      Python
      •
      Apache License 2.0
      •18•122•4•1•Updated Feb 10, 2025Feb 10, 2025

    • med-s1

      Public
      s1: Simple test-time scaling
      Python
      •
      Apache License 2.0
      •575•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • inspect-website

      Public
      SCSS
      •
      MIT License
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • meds_reader

      Public
      C++
      •
      Apache License 2.0
      •0•16•0•0•Updated Dec 18, 2024Dec 18, 2024

    • shahlab-blog

      Public
      Shah Lab Jekyll website
      HTML
      •
      MIT License
      •1•1•0•0•Updated Dec 11, 2024Dec 11, 2024

    • factehr

      Public
      Python
      •0•15•0•0•Updated Dec 9, 2024Dec 9, 2024

    • ehrshot-benchmark

      Public
      A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
      Jupyter Notebook
      •
      Apache License 2.0
      •12•149•3•0•Updated Nov 21, 2024Nov 21, 2024

    • meds_reader_paper_code

      Public
      C++
      •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

    • mimic_tutorial

      Public
      Python
      •0•3•0•0•Updated Oct 9, 2024Oct 9, 2024

    • medalign-website

      Public
      Landing page and website for the MedAlign project
      HTML
      •
      MIT License
      •2•0•0•2•Updated Oct 7, 2024Oct 7, 2024

    • INSPECT_public

      Public
      INSPECT dataset/benchmark paper, accepted by NeurIPS 2023
      Python
      •
      Apache License 2.0
      •2•26•4•0•Updated Aug 27, 2024Aug 27, 2024

    • Clinfo.AI

      Public
      This is Clinfo.AI Demo Instruction
      Jupyter Notebook
      •
      MIT License
      •8•32•1•0•Updated Aug 20, 2024Aug 20, 2024

    • aplusml

      Public
      APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models
      Jupyter Notebook
      •
      Apache License 2.0
      •4•20•4•0•Updated Aug 14, 2024Aug 14, 2024

    • slurmtool

      Public
      SLURM helper
      Python
      •0•1•0•0•Updated Aug 5, 2024Aug 5, 2024

    • gpt4usmle

      Public
      Tools for automated evaluation and generation of USMLE-style questions
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • RATE-experiments

      Public
      Code for reproducing the analyses that appear in "Evaluating Treatment Prioritization Rules via Rank-Weighted Average Treatment Effects"
      HTML
      •0•2•0•0•Updated Jul 4, 2024Jul 4, 2024

    • clinical_trial_patient_matching

      Public
      Zero-shot clinical trial matching with LLMs
      Python
      •2•8•0•0•Updated Jun 22, 2024Jun 22, 2024

    • data-align

      Public
      Clinical text summarization by adapting large language models
      Python
      •27•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • ehrshot-website

      Public
      Public website for EHRSHOT
      SCSS
      •
      MIT License
      •1•1•0•0•Updated Jun 18, 2024Jun 18, 2024

    • motor_tutorial

      Public
      Tutorial repository for the official MOTOR release
      Jupyter Notebook
      •
      Apache License 2.0
      •0•8•0•0•Updated May 6, 2024May 6, 2024

    • motor_code_release

      Public
      Python
      •0•3•0•0•Updated Mar 27, 2024Mar 27, 2024

    • temp_ds_shift_robustness

      Public
      Jupyter Notebook
      •
      MIT License
      •0•6•0•1•Updated Mar 5, 2024Mar 5, 2024

    • clinical_trial_patient_matching-website

      Public
      Public facing website for zero-shot CT patient matching paper
      JavaScript
      •0•4•0•0•Updated Feb 16, 2024Feb 16, 2024

    • pancreatic_cancer_tutorial

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 4, 2023Nov 4, 2023

    • medalign

      Public
      MedAlign is a clinician-generated dataset for instruction following with electronic medical records.
      MIT License
      •9•90•1•0•Updated Oct 19, 2023Oct 19, 2023

    • pad

      Public
      A repository for building and testing a simple PAD model
      Python
      •0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

    • survlearners

      Public
      Metalearners for Survival Data
      survival-analysiscausal-inference
      R
      •1•13•4•0•Updated Jul 31, 2023Jul 31, 2023

    • manifest

      Public
      Prompt programming with FMs.
      Python
      •
      Apache License 2.0
      •45•1•0•0•Updated Jul 31, 2023Jul 31, 2023

    • TrialProbe

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•6•0•0•Updated Jul 7, 2023Jul 7, 2023