Repositories list

• qube-cli

  Public
  Collection of QBiC's internal project templates

  hacktoberfest

  Python

  •

  MIT License

  •0•3•17•27•Updated Jan 9, 2023Jan 9, 2023

• voronoi-treemap-cli

  Public
  portlet

  HTML

  •

  MIT License

  •1•0•2•2•Updated Jan 4, 2022Jan 4, 2022

• r-analysis-templates

  Public
  Templates for pipeline downstream analysis with R and project reports with knitR

  HTML

  •1•1•1•0•Updated Jan 17, 2021Jan 17, 2021

• docx4j-investigator-portlet

  Public
  Debugging portlet

  CSS

  •

  MIT License

  •0•0•0•1•Updated Dec 9, 2020Dec 9, 2020

• metadata-utils-lib

  Public
  Helper library for openBIS meta data transformations

  Java

  •

  MIT License

  •0•0•0•0•Updated Aug 20, 2019Aug 20, 2019

• bigdatabio-2018-pub

  Public
  Query scripts for the publication "Big Data in Bioanalytics"

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 8, 2019Jul 8, 2019

• qbic-workflow-indproteome

  Public
  Workflow to create personalized protein references using FRED2.

  workflowngsdna

  Python

  •0•0•0•0•Updated Jun 7, 2019Jun 7, 2019

• nexus-listener-service

  Public
  Java

  •

  MIT License

  •0•0•0•0•Updated Apr 8, 2019Apr 8, 2019

• ncct-admin-portlet

  Public
  CSS

  •

  MIT License

  •0•0•0•0•Updated Mar 22, 2019Mar 22, 2019

• slideshow-portlet

  Public
  CSS

  •

  MIT License

  •0•0•2•0•Updated Mar 15, 2019Mar 15, 2019

• voronoi-treemap-portlet

  Public
  Visualization of hierarchical annotation data with Voronoi-Treemaps using the Vaadin framwork

  portlet

  HTML

  •

  MIT License

  •0•0•3•0•Updated Mar 12, 2019Mar 12, 2019

• mtb-metadata-specs

  Public
  A collection of molecular tumor board (MTB) related specifications.

  Groovy

  •

  MIT License

  •0•0•0•0•Updated Mar 8, 2019Mar 8, 2019

• qtrack-portlet

  Public
  other

  CSS

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 18, 2019Feb 18, 2019

• rnaseq-power-cli

  Public
  Container to perform sample size computations based on RnaSeqSampleSize

  MIT License

  •0•0•0•0•Updated Feb 12, 2019Feb 12, 2019

• qbic-wf-microarray-qc-old

  Public
  version used in our gUSE workflow for now

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 5, 2019Feb 5, 2019

• templatebuilder

  Public
  other

  Java

  •0•0•0•0•Updated Jan 21, 2019Jan 21, 2019

• workflow-submission-schema

  Public
  A humble try to create a JSON scheme for workflow submission requests.

  MIT License

  •0•0•0•0•Updated Nov 27, 2018Nov 27, 2018

• VaadinSampleTracking

  Public
  Testgrounds for adding sample tracking to a vaadin UI

  CSS

  •1•0•0•0•Updated Nov 22, 2018Nov 22, 2018

• basic-analysis-scripts

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Nov 8, 2018Nov 8, 2018

• rnaseq

  Public
  workflowngsrna

  Python

  •1•0•1•2•Updated Oct 23, 2018Oct 23, 2018

• nextflow

  Public
  A DSL for data-driven computational pipelines

  Groovy

  •

  GNU General Public License v3.0

  •624•0•0•0•Updated Oct 8, 2018Oct 8, 2018

• nfparams-model-lib

  Public
  A Groovy library that reflects a Nextflow parameter model for prototyping

  Java

  •

  MIT License

  •0•0•0•0•Updated Oct 8, 2018Oct 8, 2018

• exomseq

  Public
  workflowngsdna

  Python

  •2•0•0•0•Updated Oct 2, 2018Oct 2, 2018

• hlatyping-workflow

  Public
  Precision HLA typing from next-generation sequencing data

  workflowngsdna+ 2rnahla

  Nextflow

  •

  MIT License

  •30•3•0•0•Updated Sep 25, 2018Sep 25, 2018

• nf-registry-microservice

  Public
  A microservice consuming JSON objects emitted by Nextflows weblog feature and puts it into a DB.

  Groovy

  •

  MIT License

  •1•0•0•0•Updated Aug 2, 2018Aug 2, 2018

• projectwizard_documentation

  Public
  other

  0•0•0•0•Updated Jul 23, 2018Jul 23, 2018

• workflow_api

  Public
  library

  Java

  •0•0•0•0•Updated Jul 23, 2018Jul 23, 2018

• qwizard

  Public archive
  Experimental design wizard

  other

  Java

  •1•1•1•0•Updated Jul 20, 2018Jul 20, 2018

• qnavigator

  Public
  portlet

  CSS

  •

  GNU General Public License v3.0

  •1•0•8•0•Updated Jul 18, 2018Jul 18, 2018

• microarray-qc-workflow

  Public
  Quality Control plots and data normalisation for Microarray data

  Nextflow

  •

  MIT License

  •0•1•0•0•Updated Jul 13, 2018Jul 13, 2018