Repositories list

• MassSpecGym

  Public
  MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)

  Jupyter Notebook

  •

  MIT License

  •5•39•3•1•Updated Dec 27, 2024Dec 27, 2024

• DreaMS

  Public
  Deep Representations Empowering the Annotation of Mass Spectra

  Jupyter Notebook

  •

  MIT License

  •7•23•1•0•Updated Dec 24, 2024Dec 24, 2024

• PiperFIM

  Public
  Remarkable diversity of alkaloid scaffolds in Piper fimbriulatum

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• TerpeneMiner

  Public
  Highly accurate discovery of terpene synthases powered by machine learning

  Python

  •

  MIT License

  •3•6•1•2•Updated Nov 10, 2024Nov 10, 2024

• msn_tree_library

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• ThermoRawFileParserMacLinux

  Public
  Apache License 2.0

  •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

• Cytochromes_P450

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

• massive-vdbs

  Public
  Applying ultra-fast vector searches to MASSIVE mass spec data

  Python

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• DreaMS_legacy

  Public
  DreaMS (Deep Representations Empowering The Annotation of Mass Spectra)

  Jupyter Notebook

  •

  MIT License

  •2•5•0•0•Updated May 18, 2024May 18, 2024

• pombox

  Public
  POMBOX is a GoldenGate toolkit dedicated to the fission yeast Schizosaccharomyces pombe

  HTML

  •

  MIT License

  •16k•0•0•0•Updated Aug 21, 2023Aug 21, 2023

• TPS_mining_v1

  Public
  Older repository for the terpene synthases mining project.

  Python

  •1•0•0•0•Updated May 2, 2023May 2, 2023

• Bioinformatic-data-collector

  Public
  Tool to get data from bioinformatic databases

  Python

  •1•0•0•0•Updated Nov 26, 2022Nov 26, 2022

• TPSdownloader

  Public
  Fetch TPS cyclases information from various sources

  Python

  •

  MIT License

  •1•0•0•0•Updated Dec 17, 2021Dec 17, 2021