Repositories list

• environment_calibration

  Public
  Python

  •4•0•0•0•Updated Dec 15, 2024Dec 15, 2024

• FE-2023-examples

  Public
  Example scripts for 2023 faculty enrichment program in applied malaria modeling at Northwestern

  Python

  •32•3•0•2•Updated Nov 5, 2024Nov 5, 2024

• snt-code-library-english-version

  Public
  JavaScript

  •1•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• snt-code-library-french-version

  Public
  JavaScript

  •1•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• snt-stata-english-version

  Public
  JavaScript

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• snt-python-english-version

  Public
  JavaScript

  •1•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• snt-python-french-version

  Public
  JavaScript

  •1•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• snt-stata-french-version

  Public
  JavaScript

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• within-host-calibration

  Public
  EMOD within-host calibration with botorch

  Python

  •1•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• SNT-CODE-LIBRARY

  Public
  Python

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• snt-library

  Public
  A quarto website for the 2023 Faculty Enrichment Program

  HTML

  •8•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• snt_gin

  Public
  Subnational tailoring of malaria interventions in Guinea

  malariamathematical-modellingemod+ 1malaria-modeling

  Python

  •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• FE-2024-Ghana-examples

  Public
  Example scripts for 2024 faculty enrichment program in applied malaria modeling at UHAS

  Python

  •32•0•0•0•Updated May 23, 2024May 23, 2024

• FE-2023-quarto-website

  Public
  A quarto website for the 2023 Faculty Enrichment Program

  HTML

  •8•0•0•0•Updated May 21, 2024May 21, 2024

• urban-malaria-dhs-publication-2022

  Public
  Data and analysis scripts for examining factors associated with malaria test positivity in urban areas

  R

  •

  Apache License 2.0

  •5•0•0•0•Updated Jan 8, 2024Jan 8, 2024

• seasonality_setup

  Public
  combining Ben's bf-seasonal fitting code with tobias' project-template

  Python

  •2•0•0•0•Updated Oct 26, 2023Oct 26, 2023

• FE_project_template

  Public
  Python

  •4•0•0•0•Updated Sep 11, 2023Sep 11, 2023

• indie_emodpy

  Public
  Setting up INDIE modeling workflow using emodpy

  Python

  •0•0•0•0•Updated May 30, 2023May 30, 2023

• hbhi-dhs

  Public
  DHS analysis scripts

  surveysdhsnigeria+ 1burkina-faso

  R

  •3•0•0•0•Updated May 22, 2023May 22, 2023

• hbhi-nigeria-publication-2021

  Public
  Code and data for modeling analysis and shiny app associated with the manuscript titled 'Application of mathematical modeling to inform national malaria intervention planning in Nigeria'

  data-visualizationdistrictsnigeria+ 1malaria-modeling

  R

  •

  Apache License 2.0

  •1•1•0•0•Updated May 10, 2023May 10, 2023

• PMC_modeling_publication_2023

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 26, 2023Apr 26, 2023

• covid-sentinel-surveil

  Public
  C++

  •

  Other

  •3•0•0•0•Updated Oct 5, 2022Oct 5, 2022

• faculty-enrich-2022-examples

  Public
  Example code for the faculty enrichment program 2022

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Sep 30, 2022Sep 30, 2022

• snt_2022

  Public
  R

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• chicago_sentinel_surveillance

  Public
  Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA.

  epidemiologycovid-19sars-cov-2

  Jupyter Notebook

  •

  Apache License 2.0

  •0•4•0•0•Updated Sep 22, 2022Sep 22, 2022

• covid-chicago-surveil

  Public
  Code for simulating SARS-CoV-2 transmission in the sentinel surveillance paper (Toh et al. 2022)

  C++

  •0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

• faculty-enrich-2022

  Public
  Training materials for the faculty enrichment program 2022

  SCSS

  •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

• Burkina-trends-routine-data-publication-2021

  Public
  Project directory for BFA trends paper

  R

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jul 26, 2022Jul 26, 2022

• ICUtrigger_covid_chicago_paper_2022

  Public
  Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities.

  mathematical-modellingmodeling-and-simulationcovid-19

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 15, 2022Feb 15, 2022

• Risk_factors_ITN_Guinea_DHS_2018

  Public
  R

  •0•0•0•0•Updated Feb 8, 2022Feb 8, 2022