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@legacy-repo Legacy Repo From Fudan PGx

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    29 repositories

    • fetch-website

      Public
      Python
      •0•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • biomedgps-studio

      Public
      [Frontend] A knowledge graph system with graph neural network for drug discovery, disease mechanism and biomarker screening.
      frontendtoxicologyknowledge-graphdrug-discoverydrug-repurposinggraph-visualizationgraph-neural-networkdisease-mechanismsomics-data-analysis
      TypeScript
      •
      MIT License
      •0•2•0•0•Updated Mar 4, 2024Mar 4, 2024

    • clinico-omics-deployer

      Public
      Docker compose for all sub-systems of clinico-omics platform.
      clinico-omics
      Lua
      •
      Other
      •0•3•0•1•Updated Jan 11, 2024Jan 11, 2024

    • graph-utils

      Public
      Build, Query and Analyze a Knowledge Graph.
      Python
      •0•0•0•0•Updated Feb 4, 2023Feb 4, 2023

    • cgdspy

      Public
      Python based API for accessing the Cancer Genomics Data Server (CGDS).
      cgdschoppy-data-portal
      Python
      •
      Other
      •0•1•0•2•Updated Dec 26, 2022Dec 26, 2022

    • clinico-omics-studio

      Public
      An out-of-box Pipeline Analyzer for sequencing data, e.g. RNA-Seq, WES, WGS etc.
      Vue
      •
      MIT License
      •0•3•0•26•Updated Dec 10, 2022Dec 10, 2022

    • datahub

      Public
      A centralized location for storing curated data ready for inclusion in cBioPortal.
      HTML
      •121•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • rapex-studio

      Public
      A studio for Rapex platform
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • rapex

      Public
      A backend for RAPEX platform
      Clojure
      •
      Other
      •0•0•0•0•Updated Sep 28, 2022Sep 28, 2022

    • rapex-kg

      Public
      A knowledge graph builder that allows you to integrate and mine knowledge from multiple biomedical databases widely used nowadays for analyzing response to air pollution exposure.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 28, 2022Sep 28, 2022

    • ckg

      Public
      A fork of MannLabs' CKG repo
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2022Aug 28, 2022

    • dataseq-core

      Public
      Omics Data Commons
      Clojure
      •0•3•0•0•Updated Aug 19, 2022Aug 19, 2022

    • ECCDIA

      Public
      ECCDIA: an interactive web tool for comprehensive clinical and survival data analysis of esophageal cancer (r version).
      R
      •0•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • biovis-report-core

      Public
      Python
      •
      Other
      •0•0•0•0•Updated May 27, 2022May 27, 2022

    • lineplot-r

      Public
      biovis-plugin
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • lollipop-plot-r

      Public
      biovis-plugin
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • barplot-r

      Public
      biovis-plugin
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • piechart-js

      Public
      biovis-plugin
      JavaScript
      •
      Other
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • biovis-media-extension

      Public
      Display dynamic plot or more multimedia content in markdown.
      plugin-systemmarkdown-extension
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Mar 11, 2022Mar 11, 2022

    • tservice

      Public
      Make research tool as a service in the biomedical research...
      Clojure
      •
      Eclipse Public License 2.0
      •1•3•0•0•Updated Mar 3, 2022Mar 3, 2022

    • datains

      Public
      Data integration service (Datains) for the Clinico Omics Platform.
      Clojure
      •
      Other
      •0•3•0•0•Updated Dec 1, 2021Dec 1, 2021

    • aztig

      Public
      Telegraf, InfluxDB and Grafana init-scripts for Azure CycleCloud
      Shell
      •3•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • cbioportal-frontend

      Public
      React Frontend of cBioPortal 🎉
      TypeScript
      •
      GNU Affero General Public License v3.0
      •304•0•0•0•Updated Jun 24, 2021Jun 24, 2021

    • cbioportal

      Public
      cBioPortal for Cancer Genomics
      Java
      •
      GNU Affero General Public License v3.0
      •558•0•0•0•Updated May 19, 2021May 19, 2021

    • greenpau

      Public
      Paul Greenberg @greenpau
      4•0•0•0•Updated Nov 22, 2020Nov 22, 2020

    • clj-filesystem

      Public
      An unified sdk for several object storage system.
      Clojure
      •
      Eclipse Public License 2.0
      •0•2•0•0•Updated Aug 29, 2020Aug 29, 2020

    • choppy-helm-charts

      Public
      Helm Charts for Choppy Platform
      Smarty
      •
      Other
      •0•0•0•0•Updated Dec 14, 2019Dec 14, 2019

    • cgdsclj

      Public
      Clojure based API for accessing the Cancer Genomics Data Server (CGDS).
      clojure-librarycgdschoppy-data-portal
      Clojure
      •
      Eclipse Public License 2.0
      •0•1•0•0•Updated Jul 22, 2019Jul 22, 2019

    • level4-datamgt

      Public
      Level 4 Data Management for Genomics Data
      data-managementgenomics-data
      JavaScript
      •0•0•0•0•Updated Jul 2, 2019Jul 2, 2019