Repositories list

• Trackrefiner

  Public
  A precision tracking tool for bacillus cell tracking

  image-processingsingle-cell-imagingspatiotemporal-analysis+ 3time-lapse-microscopymicrobial-cell-trackingcell-lineage-analysis

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• Image-processing-pipelines

  Public
  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 26, 2025Jan 26, 2025

• colicin-ODE-model

  Public
  MATLAB

  •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

• CellModeller-ingallslab

  Public
  GPU-accelerated multicellular modelling framework

  Python

  •

  Other

  •50•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• Cells2Vec

  Public
  feature extraction by representation learning

  Jupyter Notebook

  •1•2•0•1•Updated May 8, 2024May 8, 2024

• ImageProcessing-Benchmarking

  Public
  A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics

  trackingimage-processingsegmentation+ 2microbiologytime-lapse-imaging

  MATLAB

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Dec 19, 2023Dec 19, 2023

• colicin_model

  Public
  0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

• bsim

  Public
  Java

  •1•0•0•0•Updated Jan 2, 2022Jan 2, 2022

• bsim-related

  Public
  post-processing scripts for bsim

  Python

  •0•0•0•0•Updated Nov 29, 2021Nov 29, 2021

• NLoed

  Public
  Nonlinear Optimal Experimental Design

  Python

  •

  GNU Lesser General Public License v3.0

  •3•9•0•0•Updated May 20, 2021May 20, 2021

• toggle_switch_fitting

  Public
  Python

  •1•0•0•1•Updated Apr 22, 2021Apr 22, 2021

• OED_Stuff

  Public
  MATLAB

  •0•1•0•0•Updated Sep 20, 2019Sep 20, 2019

• lightmatrix

  Public
  Control several LEDS using arduino shields and python.

  Python

  •0•0•0•0•Updated Apr 15, 2019Apr 15, 2019