Skip to content

@fhdsl Fred Hutch Data Science Lab

Change the repository type filter

All

    Repositories list

    124 repositories

    • metricminer-dashboard

      Public template
      A template dashboard that helps you display your metricmined data in no time!
      R
      •
      MIT License
      •0•1•8•4•Updated Oct 16, 2024Oct 16, 2024

    • metricminer

      Public
      R package that digs up data that matters from APIs, making it dashboard-ready
      edtech-software
      R
      •
      MIT License
      •0•2•34•3•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_BGC

      Public
      This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration of biosynthetic gene clusters in the BioDIGS samples using Galaxy
      coursemodulemetagenomicsbiosynthetic-gene-clustersgdscnbiodigs
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•1•0•Updated Oct 16, 2024Oct 16, 2024

    • AnVIL_Collection

      Public
      📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects
      websiteanvilcontent-librarygdscnedtech-software
      R
      •
      Creative Commons Attribution 4.0 International
      •1•0•4•1•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_AMR

      Public
      This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.
      coursemodulegdscnbiodigs
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•2•0•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_Book

      Public
      Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS.
      tutorialcourseanvilr-programminggdscnbiodigs
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•1•1•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_Soil

      Public
      This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R.
      coursemoduleanvilgdscnbiodigs
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•5•0•Updated Oct 16, 2024Oct 16, 2024

    • data_snacks

      Public
      Sharing cool data tricks in Python and R
      JavaScript
      •0•1•0•0•Updated Oct 15, 2024Oct 15, 2024

    • AnVIL_Outreach_Dashboard

      Public
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Oct 13, 2024Oct 13, 2024

    • Containers_for_Scientists

      Public
      A course to introduce Docker for research purposes
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Oct 12, 2024Oct 12, 2024

    • intro_r_slides

      Public
      Slides for the Intro R course
      HTML
      •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • GitHub_Automation_for_Scientists

      Public
      A course that introduces Github actions to developers of scientific worklflows and software
      CSS
      •
      Creative Commons Attribution 4.0 International
      •1•0•4•0•Updated Oct 10, 2024Oct 10, 2024

    • AnVIL_Poll_2024

      Public
      A summary of our findings from the 2024 State of the AnVIL user poll.
      HTML
      •
      MIT License
      •0•0•0•3•Updated Oct 10, 2024Oct 10, 2024

    • DaSEH

      Public
      🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
      data-sciencecoursetidyversepublic-healthbeginnerbeginner-friendlyr-programmingniehsenvironmental-healthbeginner-programming
      HTML
      •
      MIT License
      •1•0•44•1•Updated Oct 10, 2024Oct 10, 2024

    • better_plots

      Public
      Lua
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • OPEN_Survey_2024

      Public
      Analysis of the 2024 OPEN Survey
      R
      •
      MIT License
      •0•0•12•0•Updated Oct 9, 2024Oct 9, 2024

    • personas

      Public
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • Ethical_Data_Handling_for_Cancer_Research

      Public
      This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
      securitydataprivacyresearchethics
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•0•13•0•Updated Oct 7, 2024Oct 7, 2024

    • ITN_analysis

      Public
      Repo for storing various ITN analyses
      0•0•0•1•Updated Oct 3, 2024Oct 3, 2024

    • Intro_to_R

      Public
      The course covers fundamentals of R, a high-level programming language, and use it to wrangle data for analysis and visualization. The programming skills you will learn are transferable to learn more about R independently and other high-level languages such as Python.
      hutch-course
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•1•Updated Oct 2, 2024Oct 2, 2024

    • Intro_to_Command_Line_practice

      Public
      Python
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • test_bench_to_bytes

      Public
      Dummy repo created to help figure out https://github.com/fhdsl/bench_to_bytes/issues/7
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Oct 1, 2024Oct 1, 2024

    • fhdsl_Training_Kit

      Public
      This resource is intended to provide guidance and assistance for creating online and in-person training materials.
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Oct 1, 2024Oct 1, 2024

    • DataViz_Considerations

      Public
      ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•2•Updated Oct 1, 2024Oct 1, 2024

    • Robust_Software_Development

      Public
      ITN course on robust software development and giving your code base a full set of features beyond the code itself
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Oct 1, 2024Oct 1, 2024

    • Cancer_Clinical_Informatics

      Public
      CSS
      •
      MIT License
      •1•0•4•1•Updated Oct 1, 2024Oct 1, 2024

    • DataViz_Practice

      Public
      ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•2•Updated Oct 1, 2024Oct 1, 2024

    • Intro_to_Python

      Public
      The course covers fundamentals of Python, a high-level programming language, and use it to wrangle data for analysis and visualization.
      hutch-course
      JavaScript
      •
      Creative Commons Attribution 4.0 International
      •0•0•4•1•Updated Oct 1, 2024Oct 1, 2024

    • bench_to_bytes

      Public
      A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•5•5•Updated Oct 1, 2024Oct 1, 2024

    • intro_r_exercises

      Public
      R
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024