Repositories list

• workflows

  Public
  Reusable Workflows for GitHub Actions

  Shell

  •

  GNU Lesser General Public License v2.1

  •0•2•1•1•Updated Feb 4, 2025Feb 4, 2025

• ohdsi-glue

  Public
  tool to facilitate the setup and ongoing maintenance of OHDSI & EHDEN tool deployments

  ohdsiomop-cdm

  Python

  •

  GNU Lesser General Public License v2.1

  •1•0•4•4•Updated Jan 30, 2025Jan 30, 2025

• pyodbcbase

  Public
  Base image for python + pyodbc

  Dockerfile

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• ohdsi-achilles

  Public
  R

  •2•0•1•1•Updated Jan 20, 2025Jan 20, 2025

• baselog

  Public
  basic logging setup helper

  pythonlogging

  Python

  •

  GNU Lesser General Public License v2.1

  •0•0•0•1•Updated Jan 10, 2025Jan 10, 2025

• ohdsi-ares

  Public
  Dockerization of the Ares application designed to monitor data quality across OMOP networks

  Dockerfile

  •0•0•1•0•Updated Nov 29, 2024Nov 29, 2024

• ohdsi-atlas

  Public
  OHDSI ATLAS is a tool for scientific analysis of OMOP CDM-harmonized datasets

  Shell

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• rcore

  Public
  Dockerfile

  •0•1•0•0•Updated Nov 13, 2024Nov 13, 2024

• sqlalchemy_omopcdm

  Public
  SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM

  pythonsqlalchemyohdsi+ 3omopomop-cdmomop-cdm-database

  Python

  •

  Apache License 2.0

  •0•1•2•4•Updated Oct 23, 2024Oct 23, 2024

• sqlalchemy_omopcdm_modelgen

  Public
  code generator that powers sqlalchemy_omopcdm

  Python

  •

  GNU Lesser General Public License v2.1

  •0•0•1•5•Updated Oct 23, 2024Oct 23, 2024

• WhiteRabbit

  Public
  WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

  Java

  •

  Apache License 2.0

  •92•0•0•1•Updated Aug 5, 2024Aug 5, 2024

• ohdsi-aresindexer

  Public
  Utility to generate data export required for the Ares data quality viewer application

  R

  •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• vocabulon

  Public
  VOCABULON loads vocabs for breakfast

  Shell

  •1•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• rbasecfg

  Public
  typed 12-factor app configuration helper for R

  R

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• ohdsi-webapi

  Public
  edenceHealth Build of OHDSI WebAPI

  Dockerfile

  •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• helm-charts

  Public
  Public Helm Chart Repo

  Smarty

  •

  GNU Lesser General Public License v2.1

  •0•0•0•2•Updated Feb 29, 2024Feb 29, 2024

• ehden-cdminspection

  Public
  R

  •0•0•0•2•Updated Feb 18, 2024Feb 18, 2024

• basecfg

  Public
  typed 12-factor app configuration helper

  pythonconfiguration12-factor

  Python

  •

  GNU Lesser General Public License v2.1

  •0•0•2•1•Updated Feb 16, 2024Feb 16, 2024

• ohdsi_docker

  Public archive
  Dockerized version of OHDSI tools

  R

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•0•Updated Sep 20, 2023Sep 20, 2023

• patch4ref

  Public
  utility script for applying patches

  Shell

  •

  GNU Lesser General Public License v2.1

  •0•0•0•1•Updated Sep 5, 2023Sep 5, 2023

• mysql2csv

  Public
  utility for saving the contents of MySQL and MariaDB database tables into CSV files

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 30, 2023Mar 30, 2023

• DataQualityDashboard

  Public
  A tool to help improve data quality standards in observational data science.

  JavaScript

  •

  Apache License 2.0

  •97•0•0•0•Updated Jul 25, 2022Jul 25, 2022

• CatalogueExport

  Public
  Exports the data from the OMOP-CDM that is necessary for the EHDEN Database Catalogue

  R

  •

  Apache License 2.0

  •6•0•0•0•Updated Feb 23, 2022Feb 23, 2022

• CdmInspection

  Public
  R Package to support quality control inspection of an OMOP-CDM instance

  R

  •

  Apache License 2.0

  •15•0•0•0•Updated May 4, 2021May 4, 2021