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    16 repositories

    • AI-Assisted-Aneurysm-Detection

      Public
      This repository contains the code used for the paper "Assessing workflow impact and clinical utility of AI-assisted brain aneurysm detection: a multi-reader study"
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 22, 2025Mar 22, 2025

    • connectomemapper3

      Public
      Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
      dockerpipelinessingularityeegfmribidsbrainconnectomeparcellationdmri
      HTML
      •
      Other
      •29•72•19•2•Updated Feb 4, 2025Feb 4, 2025

    • clabtoolkit

      Public
      This repository contains a python package that includes useful tools for image processing.
      Python
      •
      Other
      •1•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • chimera

      Public
      Python
      •
      Other
      •0•5•0•0•Updated Nov 14, 2024Nov 14, 2024

    • indivbrainparcel

      Public
      Python package to parcellate the human brain using the Lausanne multi-scale cortical atlas and the thalamic nuclei atlas developed in the Connectomics and MIAL labs respectively
      Python
      •
      Other
      •1•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • hcp-behavioral-domains

      Public
      This is the repository to store the analysis code for the paper "Exploring the Latent Structure of Behavior Using the Human Connectome Project’s Data".
      Jupyter Notebook
      •
      MIT License
      •2•5•0•1•Updated Jul 11, 2023Jul 11, 2023

    • Glioma_Change_Detection_T2w

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • Aneurysm_Detection

      Public
      This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and anatomical knowledge "
      detectionsegmentationweakly-supervised-detectionaneurysmtof-mraanatomical-knowledgedeep-learning
      Python
      •
      Apache License 2.0
      •11•31•3•0•Updated Feb 14, 2023Feb 14, 2023

    • probconnatlas

      Public
      Python
      •
      Apache License 2.0
      •2•10•0•0•Updated Jan 23, 2023Jan 23, 2023

    • connectome_spectral_analysis

      Public
      Repository for paper https://authors.elsevier.com/sd/article/S1053-8119(21)00884-3
      Jupyter Notebook
      •4•1•0•0•Updated Sep 24, 2021Sep 24, 2021

    • Glioma_NLP

      Public
      This repository contains the code used for the paper:"Diagnostic surveillance of high-grade gliomas: towards automated change detection using radiology report classification"
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 19, 2021Aug 19, 2021

    • ds-sample-test2

      Public
      0•0•0•0•Updated Jul 16, 2021Jul 16, 2021

    • ds-sample-test1

      Public
      0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

    • CMTKLIB-data

      Public
      Datalad dataset that stores all data resources of the cmtklib module of Connectome Mapper 3 (https://github.com/connectomicslab/connectomemapper3).
      dataresourcessoftwarebrainparcellation
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Mar 10, 2021Mar 10, 2021

    • cmp3-ohbm2020

      Public
      Repo dedicated to resources for presenting connectome mapper 3 at OHBM 2020 Virtual Meeting
      HTML
      •1•0•0•0•Updated Jun 15, 2020Jun 15, 2020

    • hcp2bids

      Public
      To convert Human Connectome projects(HCP) data to BIDS std
      Python
      •
      MIT License
      •22•1•0•0•Updated Mar 21, 2019Mar 21, 2019