Chan Zuckerberg Initiative

All

255 repositories

single-cell-curation
Public
Code and documentation for the curation of cellxgene datasets
Python
•
MIT License
•24•39•59•6•Updated Feb 1, 2025Feb 1, 2025
single-cell-data-portal
Public
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
TypeScript
•
MIT License
•14•65•266•16•Updated Feb 1, 2025Feb 1, 2025
cellxgene-census
Public
CZ CELLxGENE Discover Census
Jupyter Notebook
•
MIT License
•23•91•120•22•Updated Feb 1, 2025Feb 1, 2025
cryoet-data-portal-backend
Public
CryoET Data Portal API server & ingestion scripts
Python
•
MIT License
•2•3•6•8•Updated Feb 1, 2025Feb 1, 2025
cryoet-data-portal
Public
CryoET Data Portal
TypeScript
•
MIT License
•11•21•278•14•Updated Feb 1, 2025Feb 1, 2025
go-misc
Public
miscellaneous go code
Go
•
MIT License
•3•7•1•0•Updated Jan 31, 2025Jan 31, 2025
github-actions
Public
A collection of re-usable GitHub Actions
HCL
•
MIT License
•4•5•1•6•Updated Jan 31, 2025Jan 31, 2025
homebrew-tap
Public
Ruby
•2•3•2•0•Updated Jan 31, 2025Jan 31, 2025
happy
Public
Happy Path Deployment Tool
kubernetes infrastructure terraform
Go
•
MIT License
•3•18•13•8•Updated Jan 31, 2025Jan 31, 2025
cztack
Public
The CZI infrastructure stack.
HCL
•
MIT License
•25•65•3•3•Updated Jan 31, 2025Jan 31, 2025
camelot
Public
Go
•
MIT License
•0•1•0•2•Updated Jan 31, 2025Jan 31, 2025
sci-components
Public
2021 Science Design System Component Library
react css theme design-system
TypeScript
•
MIT License
•7•28•108•4•Updated Jan 31, 2025Jan 31, 2025
czid-web
Public
Infectious Disease Sequencing Platform
science research biology sequencing computational-biology next-generation-sequencing bioinformatics-pipeline global-health virology infectious-diseases
TypeScript
•
MIT License
•24•83•0•2•Updated Jan 30, 2025Jan 30, 2025
czid-workflows
Public
Portable WDL workflows for CZ ID production pipelines
Python
•
MIT License
•7•42•3•8•Updated Jan 30, 2025Jan 30, 2025
aws-oidc
Public
AWS OIDC Federation
Go
•
MIT License
•5•15•1•1•Updated Jan 28, 2025Jan 28, 2025
cellxgene-ontology-guide
Public
Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
Python
•
MIT License
•1•7•8•5•Updated Jan 28, 2025Jan 28, 2025
edu-design-system
Public
Design system for Education Projects
react design-system style-dictionary
TypeScript
•
MIT License
•4•29•1•1•Updated Jan 28, 2025Jan 28, 2025
axe-storybook-testing
Public
Command line interface for testing Storybook stories for accessibility.
accessibility axe testing
TypeScript
•
MIT License
•7•53•0•0•Updated Jan 28, 2025Jan 28, 2025
napari-hub
Public
Discover, install, and share napari plugins
python tracking machine-learning deep-learning analysis detection plugins themes registration segmentation
TypeScript
•
MIT License
•18•51•96•10•Updated Jan 28, 2025Jan 28, 2025
argus-artifacts
Public
MIT License
•0•1•0•0•Updated Jan 27, 2025Jan 27, 2025
fogg
Public
Manage Infrastructure as Code with less pain.
terraform infrastructure-as-code infrastructure
Go
•
MIT License
•20•297•38•6•Updated Jan 27, 2025Jan 27, 2025
single-cell-explorer
Public
Hosted version of cellxgene
TypeScript
•
MIT License
•3•12•61•4•Updated Jan 24, 2025Jan 24, 2025
czid-graphql-federation-server
Public
GraphQL Mesh server for CZ ID
TypeScript
•
MIT License
•0•0•0•1•Updated Jan 24, 2025Jan 24, 2025
open-science
Public
curated links and customized materials to support biomedical researchers in implementing open science approaches
training open-source computational-biology open-science reproducibility biomedical-research reproducible-computational-methods
JavaScript
•
Other
•2•8•33•0•Updated Jan 24, 2025Jan 24, 2025
modified_cellxgene_gateway
Public
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Python
•
Apache License 2.0
•33•0•0•0•Updated Jan 22, 2025Jan 22, 2025
argo-helm-charts
Public
Smarty
•0•0•0•2•Updated Jan 22, 2025Jan 22, 2025
czid-platformics
Public
Python
•
MIT License
•2•4•0•12•Updated Jan 17, 2025Jan 17, 2025
blessclient
Public
Go client to negotiate SSH certificates
czi ssh certificate rsync scp ssh-agent
Go
•
MIT License
•17•64•8•2•Updated Jan 17, 2025Jan 17, 2025
platformics
Public
Codegen Python GraphQL Entity Framework
Python
•
MIT License
•0•4•14•2•Updated Jan 16, 2025Jan 16, 2025
cryoet-data-portal-neuroglancer
Public
CryoET Data Portal Neuroglancer configuration helper
Python
•
MIT License
•2•1•1•6•Updated Jan 15, 2025Jan 15, 2025