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    6 repositories

    • bcl2fastq2_Pipeline

      Public
      A snakemake-based workflow for converting Illumina's bcl files to fastq files with the option of further downstream analysis (using FastQC, STAR+RSeQC, cutadapt) and encryption via gocryptfs
      Python
      •0•1•1•0•Updated Aug 8, 2024Aug 8, 2024

    • deep_snake

      Public
      deep_snake - snakemake-based deepconsensus (Pacbio SequelII subreads - to deepconsensus.fastq)
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • BulkRNASeqGUI

      Public
      A shiny / TCC-GUI based application for users RNASeq data analysis / exploratory plotting
      R
      •
      MIT License
      •0•1•0•1•Updated Sep 29, 2022Sep 29, 2022

    • scRNAseq_Pipeline

      Public
      A snakemake- and seurat-based scRNA-seq analysis pipeline.
      Python
      •0•1•0•0•Updated Jul 5, 2022Jul 5, 2022

    • circrna_detection

      Public
      circs_snake : a snakemake-based circRNA detection workflow
      rna-seqrnacircularrna-seq-pipelinernaseq-pipeline
      Python
      •
      MIT License
      •1•1•1•0•Updated Feb 1, 2022Feb 1, 2022

    • BNG_nanotatoR

      Public
      A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
      rannotationopticalgenome-analysisstructural-variationsmapbionano
      R
      •0•0•0•0•Updated Sep 30, 2021Sep 30, 2021